Homer de novo Motif Results (hs_EmbryonicEndoderm_HUES64_normal_KLF5_SRX702029_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 27
Total background sequences = 38200
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 * A G T C C G T A A C T G A C G T A T C G C G T A A C T G C T A G C G T A C G T A A C G T G T A C G C T A A G C T C G A T A C G T 1e-11-2.589e+0114.81%0.02%27.7bp (23.6bp)Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer(0.547)
More Information | Similar Motifs Found
motif file (matrix)
2 * T A G C G A T C A C G T A C G T C G T A A C T G A G T C A G T C C G T A C T A G G T C A G T C A C T A G G C T A A C G T A C G T 1e-10-2.455e+0114.81%0.02%26.3bp (18.1bp)PB0042.1_Mafk_1/Jaspar(0.661)
More Information | Similar Motifs Found
motif file (matrix)
3 * C G A T A G T C A C G T A C T G G A T C C G T A G T C A A T G C G T A C C G T A T C A G G T C A A C G T C G T A A T G C C G T A 1e-10-2.312e+0114.81%0.03%31.7bp (33.5bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.602)
More Information | Similar Motifs Found
motif file (matrix)
4 * G T C A C G T A G A C T T A G C A C G T A C T G A C G T G T A C G T C A C G A T A T G C A G T C A G T C 1e-9-2.239e+0114.81%0.03%19.3bp (22.5bp)PH0137.1_Pitx1/Jaspar(0.698)
More Information | Similar Motifs Found
motif file (matrix)
5 * C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A 1e-6-1.477e+0111.11%0.05%26.0bp (18.6bp)RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer(0.720)
More Information | Similar Motifs Found
motif file (matrix)
6 * C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T 1e-6-1.462e+0111.11%0.06%5.7bp (20.4bp)Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer(0.626)
More Information | Similar Motifs Found
motif file (matrix)
7 * G C A T C G A T G A C T G C T A C G T A C G T A G C A T C G A T A C G T A G C T A C G T A G C T A C G T A C G T A C G T C G A T 1e-5-1.310e+0122.22%1.44%12.3bp (48.7bp)PB0182.1_Srf_2/Jaspar(0.810)
More Information | Similar Motifs Found
motif file (matrix)
8 * T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A 1e-5-1.257e+0114.81%0.38%28.6bp (30.9bp)HIC2/MA0738.1/Jaspar(0.671)
More Information | Similar Motifs Found
motif file (matrix)
9 * C T A G G T A C A G C T G T A C G T A C C A T G A G T C A G T C C G T A G T A C T A G C G T A C C G T A 1e-5-1.206e+0114.81%0.44%26.1bp (27.8bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.591)
More Information | Similar Motifs Found
motif file (matrix)
10 * G A C T A G C T C G T A T A C G C G T A A T C G G T C A C A G T C A T G A C G T G C T A A T C G A C G T A G T C G A C T G T C A 1e-5-1.196e+0114.81%0.45%34.2bp (32.5bp)Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer(0.622)
More Information | Similar Motifs Found
motif file (matrix)
11 * A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C 1e-5-1.161e+017.41%0.02%8.0bp (41.9bp)SOX8/MA0868.1/Jaspar(0.487)
More Information | Similar Motifs Found
motif file (matrix)
12 * A C T G G T A C A G T C A C G T G T A C A G T C A G T C C G T A A C T G C T A G 1e-4-1.149e+0111.11%0.15%28.4bp (30.1bp)Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.612)
More Information | Similar Motifs Found
motif file (matrix)
13 * C A T G T A G C C G A T C G T A C T A G C G A T A G T C C G A T T A G C A G C T C G A T A G T C G C A T G T A C C T G A G T C A 1e-4-1.103e+017.41%0.02%7.8bp (17.0bp)Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.543)
More Information | Similar Motifs Found
motif file (matrix)
14 * C G A T C G A T A C G T A G T C A G T C A G C T A C G T A C G T A C T G A T C G A T G C C G T A C T G A 1e-4-1.059e+017.41%0.03%1.5bp (23.3bp)EBF1/MA0154.3/Jaspar(0.737)
More Information | Similar Motifs Found
motif file (matrix)
15 * C A T G C T G A C T G A C A G T A C T G C G A T A C T G C G T A C T G A C G T A T C G A C G A T C G T A A G T C C G T A C G T A 1e-4-1.024e+0111.11%0.23%16.0bp (29.3bp)IRF1/MA0050.2/Jaspar(0.644)
More Information | Similar Motifs Found
motif file (matrix)
16 * A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G 1e-4-1.007e+0111.11%0.25%34.4bp (30.2bp)PH0147.1_Pou3f2/Jaspar(0.680)
More Information | Similar Motifs Found
motif file (matrix)
17 * C G T A C G T A C G T A C G A T A G C T A G T C G T C A C G T A A T G C A C G T A C G T C T A G C T G A C G T A A C G T G C A T 1e-4-9.531e+007.41%0.05%1.4bp (32.9bp)PH0114.1_Nkx2-5/Jaspar(0.650)
More Information | Similar Motifs Found
motif file (matrix)
18 * G T A C A G T C G A C T G A T C A G C T T A C G C A T G A G T C A G C T C G A T C A T G A G T C G T A C A G T C G T C A G T A C 1e-3-9.010e+0011.11%0.36%11.1bp (31.0bp)PRDM1/MA0508.1/Jaspar(0.555)
More Information | Similar Motifs Found
motif file (matrix)
19 * A G T C G T A C A G C T A T C G A G T C C G T A C G T A A G T C A G T C G T C A 1e-3-8.345e+0018.52%2.13%25.7bp (32.0bp)Dux/MA0611.1/Jaspar(0.631)
More Information | Similar Motifs Found
motif file (matrix)
20 * A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C 1e-3-7.230e+003.70%0.01%0.0bp (19.7bp)Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer(0.651)
More Information | Similar Motifs Found
motif file (matrix)
21 * A C T G A C T G A C T G C G T A C G T A C G T A A G T C A C G T C G T A A C G T 1e-3-7.230e+003.70%0.00%0.0bp (11.6bp)NFATC1/MA0624.1/Jaspar(0.637)
More Information | Similar Motifs Found
motif file (matrix)
22 * C G T A C G T A A C G T A G T C C G T A C G T A A C G T A G T C A C T G A C G T 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer(0.804)
More Information | Similar Motifs Found
motif file (matrix)
23 * A C G T A C G T A G T C A G T C A G T C C G T A A C G T A G T C A G T C A C T G 1e-3-7.230e+003.70%0.00%0.0bp (8.7bp)PB0167.1_Sox13_2/Jaspar(0.702)
More Information | Similar Motifs Found
motif file (matrix)
24 * C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)PB0207.1_Zic3_2/Jaspar(0.702)
More Information | Similar Motifs Found
motif file (matrix)
25 * A C G T A C T G A C T G A C G T A C T G A G T C C G T A A C T G A C G T A C T G 1e-3-7.230e+003.70%0.00%0.0bp (9.7bp)PB0091.1_Zbtb3_1/Jaspar(0.777)
More Information | Similar Motifs Found
motif file (matrix)
26 * A C T G C G T A C G T A A C T G A C G T A G T C A G T C C G T A A G T C A C G T 1e-3-7.230e+003.70%0.00%0.0bp (10.7bp)PB0134.1_Hnf4a_2/Jaspar(0.776)
More Information | Similar Motifs Found
motif file (matrix)
27 * A C G T C G T A A G T C C G T A A C G T A C G T C G T A A C T G A G T C A G T C 1e-3-7.230e+003.70%0.00%0.0bp (13.3bp)PB0051.1_Osr2_1/Jaspar(0.725)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C G T C G T A A C T G A C T G A C G T A G T C C G T A A G T C A C G T C G T A 1e-3-7.230e+003.70%0.00%0.0bp (1.2bp)NR4A2/MA0160.1/Jaspar(0.754)
More Information | Similar Motifs Found
motif file (matrix)
29 * A C G T A G T C A C G T A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A A C G T 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)PB0176.1_Sox5_2/Jaspar(0.625)
More Information | Similar Motifs Found
motif file (matrix)
30 * A G T C A G T C C G T A A G T C A G T C C G T A A G T C A G T C C G T A C G T A A C G T A G T C C G T A 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)PBX1/MA0070.1/Jaspar(0.680)
More Information | Similar Motifs Found
motif file (matrix)
31 * A C G T C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C T G A C G T A G T C C G T A C G T A 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)PB0175.1_Sox4_2/Jaspar(0.654)
More Information | Similar Motifs Found
motif file (matrix)
32 * A C T G A C T G C G T A C G T A A C G T A C T G A G T C C G T A A C T G A C T G C G T A A C T G A G T C 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)TEAD3/MA0808.1/Jaspar(0.666)
More Information | Similar Motifs Found
motif file (matrix)
33 * T A C G A G T C G T A C G T C A C G T A A C T G A C G T C G T A C T A G C T A G G C T A C G A T G C A T C T G A A G T C G T C A 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)MSX2/MA0708.1/Jaspar(0.598)
More Information | Similar Motifs Found
motif file (matrix)
34 * A G T C A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)HOXC13/MA0907.1/Jaspar(0.618)
More Information | Similar Motifs Found
motif file (matrix)
35 * A G T C A G T C C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C T G A C G T 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)Sox17/MA0078.1/Jaspar(0.600)
More Information | Similar Motifs Found
motif file (matrix)
36 * C G T A A G T C C G T A C G T A C G T A C G T A C G T A C G T A A C T G C G T A A C G T C G T A A G T C C G T A A C G T A C T G 1e-3-7.230e+003.70%0.00%0.0bp (0.0bp)DMRT3/MA0610.1/Jaspar(0.592)
More Information | Similar Motifs Found
motif file (matrix)
37 * A C T G A G T C C G T A C G T A A G T C A C G T A C T G A G T C A G T C A G T C 1e-2-6.537e+003.70%0.01%0.0bp (1.3bp)AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer(0.782)
More Information | Similar Motifs Found
motif file (matrix)
38 * A G T C A G T C A G T C C G T A A C T G C G T A A C G T A G T C C G T A A C T G 1e-2-6.537e+003.70%0.01%0.0bp (15.4bp)Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer(0.670)
More Information | Similar Motifs Found
motif file (matrix)
39 * A G T C C G T A A C G T A C T G A G T C A G T C A C G T A C T G A C G T C G T A 1e-2-6.537e+003.70%0.01%0.0bp (14.8bp)SD0002.1_at_AC_acceptor/Jaspar(0.681)
More Information | Similar Motifs Found
motif file (matrix)
40 * A C T G A C T G A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T 1e-2-6.537e+003.70%0.01%0.0bp (11.6bp)PB0060.1_Smad3_1/Jaspar(0.647)
More Information | Similar Motifs Found
motif file (matrix)
41 * A C T G A C G T C G T A A C T G C G T A C G T A A C G T C G T A A C T G C G T A 1e-2-6.537e+003.70%0.01%0.0bp (19.2bp)PB0173.1_Sox21_2/Jaspar(0.599)
More Information | Similar Motifs Found
motif file (matrix)
42 * C G T A C G T A A G T C C G T A A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A C G T A 1e-2-6.537e+003.70%0.01%0.0bp (0.0bp)PB0122.1_Foxk1_2/Jaspar(0.673)
More Information | Similar Motifs Found
motif file (matrix)
43 * C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T 1e-2-6.537e+003.70%0.01%0.0bp (8.5bp)PB0178.1_Sox8_2/Jaspar(0.654)
More Information | Similar Motifs Found
motif file (matrix)
44 * C G T A G T C A G T A C G A C T C G A T A C G T C G T A C T A G A C T G A G T C C G A T A C T G G A T C 1e-2-5.153e+003.70%0.02%0.0bp (40.5bp)Barhl1/MA0877.1/Jaspar(0.540)
More Information | Similar Motifs Found
motif file (matrix)
45 * C G T A C T A G C G T A T A C G C G T A G T C A G A C T T G A C G A T C T C G A G T C A T C G A C G T A 1e-1-3.609e+0014.81%4.30%23.1bp (42.6bp)Mecom/MA0029.1/Jaspar(0.596)
More Information | Similar Motifs Found
motif file (matrix)