Information for 7-CAVTDGHCBTCGTTDB (Motif 11)

A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
Reverse Opposite:
T A C G G C T A T G C A G C T A T G A C C T A G G T C A T C G A A C T G C A G T G A T C G A T C T C G A A G C T A G C T A T C G
p-value:1e-5
log p-value:-1.161e+01
Information Content per bp:1.560
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets18.0 +/- 8.0bp
Average Position of motif in Background60.9 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX8/MA0868.1/Jaspar

Match Rank:1
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CAVTDGHCBTCGTTDB
AACACTGCACATTGTT--
 A C G T A C G T A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.47
Offset:6
Orientation:forward strand
Alignment:CAVTDGHCBTCGTTDB
------CCTTTGTT--
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:CAVTDGHCBTCGTTDB
----TGACCTTGAT--
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

PH0044.1_Homez/Jaspar

Match Rank:4
Score:0.46
Offset:3
Orientation:forward strand
Alignment:CAVTDGHCBTCGTTDB----
---AAAACATCGTTTTTAAG
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

PB0131.1_Gmeb1_2/Jaspar

Match Rank:5
Score:0.46
Offset:0
Orientation:forward strand
Alignment:CAVTDGHCBTCGTTDB
TGGGCGACGTCGTTAA
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A

PB0073.1_Sox7_1/Jaspar

Match Rank:6
Score:0.45
Offset:-9
Orientation:forward strand
Alignment:---------CAVTDGHCBTCGTTDB
AATAAAGAACAATAGAATTTCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.45
Offset:-1
Orientation:reverse strand
Alignment:-CAVTDGHCBTCGTTDB
NNACTTGCCTT------
 A C G T A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.45
Offset:6
Orientation:forward strand
Alignment:CAVTDGHCBTCGTTDB
------CCWTTGTYYB
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.45
Offset:6
Orientation:forward strand
Alignment:CAVTDGHCBTCGTTDB
------YCTTTGTTCC
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.45
Offset:6
Orientation:forward strand
Alignment:CAVTDGHCBTCGTTDB
------CCTTTGTTTT
 A T G C T C G A T C G A A G C T C T A G C T A G G T C A T G A C A G C T A C G T G A T C A C T G C G A T A C G T C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T