Information for 4-CATGGTCTGC (Motif 20)

A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C T G
p-value:1e-3
log p-value:-7.230e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background57.8 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATGGTCTGC----
CCATTGTATGCAAAT
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CATGGTCTGC
--TWGTCTGV
 A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CATGGTCTGC
--CTGTCTGG
 A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATGGTCTGC
VBSYGTCTGG
 A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CATGGTCTGC-
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATGGTCTGC
CTCATTGTC---
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATGGTCTGC--
CAACGTCCGCGG
 A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CATGGTCTGC
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CATGGTCTGC
CCATTGTTTT-
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CATGGTCTGC
CCATTGTTYB-
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T A C T G A G T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T