Information for 6-VCCATCHTGCCCA (Motif 8)

T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G A C T G A G T C G T C A C A T G C T A G G T C A A G C T C T A G A C T G A C G T
p-value:1e-5
log p-value:-1.257e+01
Information Content per bp:1.708
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif14.81%
Number of Background Sequences with motif142.2
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets42.5 +/- 28.6bp
Average Position of motif in Background52.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.67
Offset:6
Orientation:forward strand
Alignment:VCCATCHTGCCCA--
------ATGCCCACC
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:VCCATCHTGCCCA----
-------TGCCCAGNHW
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:VCCATCHTGCCCA-----
--GGGTGTGCCCAAAAGG
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:forward strand
Alignment:VCCATCHTGCCCA--
------CTGCCCGCA
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:VCCATCHTGCCCA
-------TGACCT
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:VCCATCHTGCCCA--
-------TGACCYCT
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

ESR2/MA0258.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--VCCATCHTGCCCA
AGGNCANNGTGACCT
 A C G T A C G T T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:VCCATCHTGCCCA--
---GCCMCGCCCMCY
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T T A C G A G T C G A T C T G A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C G A T C

KLF14/MA0740.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:VCCATCHTGCCCA---
--GGCCACGCCCCCTT
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T C A T G T C A G G T A C A G T C T G C A G A T C T C A G A T G C A G T C A G T C G T A C G A T C G A C T G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:VCCATCHTGCCCA--
-------TGACCTYA
 T A C G G T A C A G T C C T G A A C G T A G T C G A T C A C G T A C T G G T A C A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A