Information for 3-RWKAATKRKGTSA (Motif 5)

C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A
Reverse Opposite:
A C G T A T G C C G T A A G T C G T C A A G T C G T A C C G T A A C G T A C G T G T A C C G A T G A T C
p-value:1e-6
log p-value:-1.477e+01
Information Content per bp:1.803
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif19.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets45.0 +/- 26.0bp
Average Position of motif in Background31.0 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:RWKAATKRKGTSA
---AAYTAGGTCA
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

JUND(var.2)/MA0492.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RWKAATKRKGTSA--
AAAGATGATGTCATC
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T A C G T
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C

JUN/MA0488.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RWKAATKRKGTSA-
-AAGATGATGTCAT
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
A C G T C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T

SREBF1/MA0595.1/Jaspar

Match Rank:4
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:RWKAATKRKGTSA-
----GTGGGGTGAT
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.71
Offset:4
Orientation:forward strand
Alignment:RWKAATKRKGTSA-
----ATGGGGTGAT
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RWKAATKRKGTSA-
TATAAGTAGGTCAA
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:RWKAATKRKGTSA-
----ATGGGGTGAT
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RWKAATKRKGTSA-
GACGATAATGAGCTTGC
 A C G T A C G T A C G T C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

PH0009.1_Bsx/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--RWKAATKRKGTSA-
CAGGTAATTACCTCAG
 A C G T A C G T C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

POU6F2/MA0793.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RWKAATKRKGTSA
-NTAATGAGCT--
 C T A G C G T A A C T G C G T A C G T A A C G T A C T G C T A G A C G T A C T G A C G T A T C G C G T A
A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T A C G T