Information for 9-ACACAGCGAG (Motif 24)

C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C T G A G T C A C G T A C T G A C G T A C T G A C G T
p-value:1e-3
log p-value:-7.230e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets5.0 +/- 0.0bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCGAG---
GAGCACAGCAGGACA
 A C G T A C G T C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACACAGCGAG
-CACAGN---
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ACACAGCGAG
DCTCAGCAGG
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCGAG---
CCACACAGCAGGAGA
 A C G T A C G T C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ACACAGCGAG---
CCACACAGCAGGAGA
 A C G T A C G T C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACACAGCGAG-----
DCHCAGCAGGRGGCC
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ACACAGCGAG---
-CACAGCAGGGGG
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACACAGCGAG
ACAAAG----
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ACACAGCGAG-----
-CACAGCGGGGGGTC
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ACACAGCGAG
---CAGCC--
 C G T A A G T C C G T A A G T C C G T A A C T G A G T C A C T G C G T A A C T G
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T