Information for 5-RAAATAWRGRTYY (Motif 6)

C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
Reverse Opposite:
C T G A C T G A C G T A A G T C A G T C A G C T C G A T A C G T C G T A A C G T A C G T A C G T A G T C
p-value:1e-6
log p-value:-1.462e+01
Information Content per bp:1.823
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets12.0 +/- 5.7bp
Average Position of motif in Background54.2 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----RAAATAWRGRTYY
DCYAAAAATAGM-----
 A C G T A C G T A C G T A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RAAATAWRGRTYY
CCAAAAATAG------
 A C G T A C G T A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RAAATAWRGRTYY
CCATATATGG----
 A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------RAAATAWRGRTYY
ATGCTAAAAATAGAA----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RAAATAWRGRTYY---
--ANTATCGATTTTTN
 C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----RAAATAWRGRTYY
KCCAAAAATAGC-----
 A C G T A C G T A C G T A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RAAATAWRGRTYY
AAAACAAAGG---
 C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RAAATAWRGRTYY
ANAGATAAGAA---
 A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----RAAATAWRGRTYY
GCTAAAAATAGC-----
 A C G T A C G T A C G T A C G T C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RAAATAWRGRTYY---
--ATTATCGATTTTTT
 C T A G C G T A C G T A C G T A A C G T C G T A C G T A C T G A A C T G C T A G C G A T A G C T A G C T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T