Information for 10-GCNAACTRCTTAG (Motif 16)

A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G
Reverse Opposite:
G T A C G A C T C G T A C G T A A C T G A G C T C G T A T C A G A C G T A G C T C G T A T A C G A G T C
p-value:1e-4
log p-value:-1.007e+01
Information Content per bp:1.627
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif92.3
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets44.0 +/- 34.4bp
Average Position of motif in Background48.5 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0147.1_Pou3f2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCNAACTRCTTAG----
GATAATTAATTAGTTTG
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T A C G T A C G T A C G T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G

PH0028.1_En1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCNAACTRCTTAG---
GCGAACTAATTAATGC
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

LHX6/MA0658.1/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCNAACTRCTTAG-
----NCTAATTAGT
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T
A C G T A C G T A C G T A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

PAX4/MA0068.2/Jaspar

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCNAACTRCTTAG
-----CTAATTAG
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G
A C G T A C G T A C G T A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

PH0132.1_Pax6/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCNAACTRCTTAG---
GNNAATTAATTAATCA
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T A C G T A C G T
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A

PH0131.1_Pax4/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCNAACTRCTTAG----
NNGNGCTAATTAGNTNA
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

PH0154.1_Prrx1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCNAACTRCTTAG----
ANNAGTTAATTAGTTAN
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T A C G T A C G T A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

EN1/MA0027.2/Jaspar

Match Rank:8
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCNAACTRCTTAG
-----CTAATTAG
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G
A C G T A C G T A C G T A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCNAACTRCTTAG
---ADBTAATTAR
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G
A C G T A C G T A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G

PH0092.1_Lhx2/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCNAACTRCTTAG-----
-TAAACTAATTAGTGAAC
 A C T G A G T C A C G T T C G A T C G A A G T C C G A T C T G A T A G C A C G T A C G T C G T A C A T G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C