Information for 25-TTTTCATGAAAATCAT (Motif 43)

C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
Reverse Opposite:
G C T A A C G T C T A G G T C A C G A T G C A T C G A T A C G T A G T C C G T A A C G T C T A G C T G A C G T A C G T A C G T A
p-value:1e-2
log p-value:-6.537e+00
Information Content per bp:1.809
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.0 +/- 0.0bp
Average Position of motif in Background21.0 +/- 8.5bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTTTCATGAAAATCAT
ACATTCATGACACG---
 A C G T C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTCATGAAAATCAT
CATTGTTATGCAAAT---
 A C G T A C G T C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTTCATGAAAATCAT
CTTTGTTATGCAAAT---
 A C G T A C G T C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TTTTCATGAAAATCAT
GACCACATTCATACAAT----
 A C G T A C G T A C G T A C G T A C G T C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTTTCATGAAAATCAT
----TATGCWAATBAV
 C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTTTCATGAAAATCAT
GAATATTCAT---------
 A C G T A C G T A C G T C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTTTCATGAAAATCAT-
-TTGTATGCAAATTAGA
 C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTTTCATGAAAATCAT-
-TTGTATGCAAATTAGA
 C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTTTCATGAAAATCAT
---TTATGCAAATTA-
 C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTTCATGAAAATCAT
GHATATKCAT---------
 A C G T A C G T A C G T C G A T G C A T A C G T A G C T A G T C C G T A C G A T C T A G G T C A C G T A C G T A C G T A A C G T A G T C C G T A C G A T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T