Homer de novo Motif Results (hs_hESC_hESC_undef_SOX2_SRX1487284_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 541
Total background sequences = 47461
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T 1e-168-3.878e+0225.51%0.68%23.0bp (29.0bp)Pou5f1::Sox2/MA0142.1/Jaspar(0.985)
More Information | Similar Motifs Found
motif file (matrix)
2 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T 1e-132-3.046e+0243.07%6.10%22.7bp (32.8bp)Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer(0.965)
More Information | Similar Motifs Found
motif file (matrix)
3 A G T C G T A C A G T C A G T C G T C A A C G T A G C T G A C T A G T C C G T A A C T G C T G A A G T C A G T C G T C A A G T C 1e-17-3.990e+011.29%0.00%21.0bp (4.9bp)Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer(0.632)
More Information | Similar Motifs Found
motif file (matrix)
4 T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A 1e-15-3.662e+019.43%2.35%26.8bp (32.0bp)POU3F4/MA0789.1/Jaspar(0.821)
More Information | Similar Motifs Found
motif file (matrix)
5 T C A G C A T G C T G A A C G T C T A G C G A T A C G T C G T A C G T A A C G T T A C G T G C A A C T G C A T G A T C G C G A T 1e-14-3.346e+011.11%0.00%32.0bp (4.5bp)Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer(0.733)
More Information | Similar Motifs Found
motif file (matrix)
6 G T C A A G T C C T G A A T C G A G T C C T A G C A T G A C T G C T A G T C A G 1e-14-3.317e+016.28%1.15%27.4bp (29.9bp)ZIC1/MA0696.1/Jaspar(0.822)
More Information | Similar Motifs Found
motif file (matrix)
7 A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C 1e-12-2.891e+019.80%3.07%26.6bp (31.5bp)Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.768)
More Information | Similar Motifs Found
motif file (matrix)
8 A C G T A C T G A G T C C G A T C G T A C G T A A C G T C G A T C G A T A C T G A G T C C G T A C G T A 1e-12-2.781e+011.66%0.04%21.1bp (22.6bp)Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer(0.737)
More Information | Similar Motifs Found
motif file (matrix)
9 * G C T A A C G T A C T G C G T A C A G T A T C G C G T A A T C G A G C T C T G A G C T A C G T A C G T A T A G C C T G A C T G A 1e-10-2.396e+011.48%0.04%20.9bp (22.1bp)PB0123.1_Foxl1_2/Jaspar(0.619)
More Information | Similar Motifs Found
motif file (matrix)
10 * C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C 1e-9-2.206e+011.29%0.03%24.6bp (26.4bp)PB0189.1_Tcfap2a_2/Jaspar(0.572)
More Information | Similar Motifs Found
motif file (matrix)
11 * G T A C A T C G G A T C G A C T T A G C G C T A A G T C C G A T C T A G G A C T A C G T A T C G G T A C C G T A C T A G T G A C 1e-9-2.127e+011.48%0.05%28.3bp (25.5bp)POL008.1_DCE_S_I/Jaspar(0.565)
More Information | Similar Motifs Found
motif file (matrix)
12 * A G T C A G T C G C A T A G T C G T A C G A T C G T A C A G T C C G T A A G C T A C G T A C T G C G T A A T C G A G T C A C G T 1e-9-2.110e+010.74%0.00%25.9bp (19.0bp)Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer(0.621)
More Information | Similar Motifs Found
motif file (matrix)
13 * C T A G A C G T A G T C C G T A C T G A G T C A A G T C C G T A A C T G C G A T A C T G A C T G A C G T A G T C A C G T A T G C 1e-9-2.110e+010.74%0.00%19.1bp (0.0bp)PB0099.1_Zfp691_1/Jaspar(0.604)
More Information | Similar Motifs Found
motif file (matrix)
14 * A T G C G T A C A G T C A C G T A G T C A G T C A C G T G T A C G T A C A C G T A G T C G T A C A G T C C G A T A T G C G T A C 1e-9-2.110e+010.74%0.00%21.7bp (0.0bp)ZNF263/MA0528.1/Jaspar(0.615)
More Information | Similar Motifs Found
motif file (matrix)
15 * A C T G C G T A G T A C A G T C A C G T A T C G C G T A T A G C A C G T C G T A A C T G C G A T A C G T A G C T C G T A A T G C 1e-9-2.110e+010.74%0.00%23.4bp (0.0bp)DUXA/MA0884.1/Jaspar(0.584)
More Information | Similar Motifs Found
motif file (matrix)
16 * C G T A C G T A A C T G C T G A C G T A G T A C C G T A A G T C G T A C G C A T A C G T A C G T A C G T 1e-8-2.036e+011.11%0.02%16.8bp (31.8bp)NR4A2/MA0160.1/Jaspar(0.675)
More Information | Similar Motifs Found
motif file (matrix)
17 * A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T 1e-8-2.036e+011.11%0.02%25.0bp (34.8bp)PH0006.1_Barhl2/Jaspar(0.663)
More Information | Similar Motifs Found
motif file (matrix)
18 * T C A G C T G A C G T A A C G T C T A G A C G T A C G T C T A G A C G T A C T G T C G A A C G T A C T G 1e-8-1.944e+011.85%0.13%29.1bp (30.0bp)PB0121.1_Foxj3_2/Jaspar(0.700)
More Information | Similar Motifs Found
motif file (matrix)
19 * C G T A A C T G C G T A A C T G C G T A T A G C C T A G A C T G T G A C C G T A A C T G C G T A C G T A 1e-7-1.751e+010.92%0.02%26.9bp (25.4bp)ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer(0.579)
More Information | Similar Motifs Found
motif file (matrix)
20 * A C T G C T G A C T G A A C G T A C T G T C A G A G T C A C T G A G T C C G A T A C T G C A T G C T A G T C A G A G T C G T A C 1e-7-1.735e+011.11%0.03%26.2bp (22.7bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.641)
More Information | Similar Motifs Found
motif file (matrix)
21 * A T C G A C G T G C A T C G T A A C T G A C G T A T C G C G T A C G T A A G T C C G T A A C T G A C T G T C G A G T C A G T A C 1e-7-1.628e+010.92%0.02%25.4bp (35.4bp)Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer(0.619)
More Information | Similar Motifs Found
motif file (matrix)
22 * A T G C A T G C C T G A A C G T G C T A A C G T A C T G G T C A A C G T A T C G G A C T G T A C G T C A 1e-6-1.553e+011.29%0.07%22.8bp (28.8bp)OLIG2/MA0678.1/Jaspar(0.673)
More Information | Similar Motifs Found
motif file (matrix)
23 * G T C A A C G T A G T C C G A T A G C T A C T G A G T C A C G T A C T G A C G T A T G C G A C T A T C G 1e-6-1.394e+011.11%0.06%24.8bp (29.9bp)PB0207.1_Zic3_2/Jaspar(0.708)
More Information | Similar Motifs Found
motif file (matrix)
24 * C G T A A C T G A G T C A C G T A C T G A C T G C G T A A C T G A C T G C A T G C G T A A C T G A C G T 1e-5-1.316e+010.55%0.00%25.5bp (2.7bp)PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.609)
More Information | Similar Motifs Found
motif file (matrix)
25 * A C T G A C T G A C T G A C G T C T A G A G T C A C G T A C G T C G A T A C T G A C G T A G C T A G T C A G T C A G C T G C T A 1e-5-1.316e+010.55%0.01%24.0bp (13.7bp)Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer(0.656)
More Information | Similar Motifs Found
motif file (matrix)
26 * A C T G A C T G C T A G A C T G A C T G A T C G A C T G A T G C A G T C A C G T A C T G C G T A A C T G 1e-5-1.238e+010.74%0.02%25.8bp (18.7bp)ZNF740/MA0753.1/Jaspar(0.675)
More Information | Similar Motifs Found
motif file (matrix)
27 * C G T A A G T C G C T A G T C A A G C T A G T C C G T A A G T C C G T A A T G C T A C G T C G A A G T C 1e-5-1.215e+010.92%0.05%22.8bp (24.9bp)Gfi1/MA0038.1/Jaspar(0.713)
More Information | Similar Motifs Found
motif file (matrix)
28 * C T G A G T A C C G T A A T G C A T C G C T G A G T A C A G T C A T G C A C G T 1e-4-1.124e+012.22%0.47%20.3bp (27.3bp)LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer(0.732)
More Information | Similar Motifs Found
motif file (matrix)
29 * C G T A A C T G A G T C A G T C G T A C A G C T A G C T A C T G A G T C A G T C C G T A C T A G A G T C G A T C G A C T A C T G 1e-4-1.110e+010.55%0.01%30.1bp (22.7bp)ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer(0.576)
More Information | Similar Motifs Found
motif file (matrix)
30 * A C T G C G T A A T C G A G T C A C G T A C T G C G T A A G T C A C T G C G T A 1e-4-1.043e+010.55%0.01%32.7bp (16.7bp)Mafb/MA0117.2/Jaspar(0.659)
More Information | Similar Motifs Found
motif file (matrix)
31 * A C T G A C T G C T G A C G T A C G A T C G T A A T C G A C G T A C T G C G A T A C T G G T C A T C A G 1e-4-1.043e+010.55%0.01%25.6bp (27.6bp)TBX21/MA0690.1/Jaspar(0.613)
More Information | Similar Motifs Found
motif file (matrix)
32 * A C T G A G T C C T A G A G T C G T C A A C T G C G T A A G T C C G T A G A C T A C T G A C T G A C T G 1e-4-9.652e+000.37%0.00%27.3bp (0.0bp)Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer(0.619)
More Information | Similar Motifs Found
motif file (matrix)
33 * C G T A A G T C A G T C A C G T A C T G A C G T C G T A A C T G A C G T A G T C 1e-3-8.705e+000.55%0.02%27.6bp (11.5bp)ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer(0.709)
More Information | Similar Motifs Found
motif file (matrix)
34 * A C G T C G T A A C G T A G T C A C G T A C G T C G T A A C G T C G T A A C G T A C G T A G T C A C T G 1e-1-4.480e+000.18%0.00%0.0bp (0.0bp)Mecom/MA0029.1/Jaspar(0.728)
More Information | Similar Motifs Found
motif file (matrix)