Information for 6-VATTTACWWA (Motif 4)

T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A
Reverse Opposite:
A C G T C G T A C G A T A C T G A G C T C G T A C T G A C T G A A C G T A G T C
p-value:1e-15
log p-value:-3.662e+01
Information Content per bp:1.723
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif9.43%
Number of Background Sequences with motif1114.5
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets46.0 +/- 26.8bp
Average Position of motif in Background49.4 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:VATTTACWWA
-ATTTGCATA
 T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:VATTTACWWA
-ATTTGCATA
 T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

POU2F1/MA0785.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:VATTTACWWA--
AATTTGCATANT
 T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

POU3F2/MA0787.1/Jaspar

Match Rank:4
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-VATTTACWWA-
TAATTTGCATAA
 A C G T T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-VATTTACWWA-
TAATTTGCATAA
 A C G T T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:VATTTACWWA-
-ATTTGCATAA
 T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---VATTTACWWA---
TNTAATTTGCATACNA
 A C G T A C G T A C G T T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---VATTTACWWA---
TNTAATTTGCATACNA
 A C G T A C G T A C G T T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-VATTTACWWA--
AAATTAGCATAAT
 A C G T T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---VATTTACWWA---
TNTAATTTGCATANNN
 A C G T A C G T A C G T T C A G C G T A A G C T A G C T G A C T C T G A A G T C G C T A C G A T C G T A A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A