Information for 1-CCATTGTBYT (Motif 2)

A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
Reverse Opposite:
T C G A T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G
p-value:1e-132
log p-value:-3.046e+02
Information Content per bp:1.734
Number of Target Sequences with motif233.0
Percentage of Target Sequences with motif43.07%
Number of Background Sequences with motif2895.1
Percentage of Background Sequences with motif6.10%
Average Position of motif in Targets56.0 +/- 22.7bp
Average Position of motif in Background50.1 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCATTGTTYB
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCATTGTTTT
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGTBYT
NCCATTGTTY-
 A C G T A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCWTTGTY--
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCATTGTTNY
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTBYT
NCCATTGTTC-
 A C G T A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCTTTGTT--
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCWTTGTYYB
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCATTGTTC-
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCATTGTBYT
CCTTTGTTTT
 A T G C A G T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G C T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T