Information for 8-CTGAATGGCC (Motif 7)

A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C
Reverse Opposite:
C A T G A T C G G T A C G T A C G T C A G C A T A G C T G T A C G C T A T A C G
p-value:1e-12
log p-value:-2.891e+01
Information Content per bp:1.483
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif9.80%
Number of Background Sequences with motif1458.5
Percentage of Background Sequences with motif3.07%
Average Position of motif in Targets52.8 +/- 26.6bp
Average Position of motif in Background52.1 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CTGAATGGCC
GTTAATGGCC
 A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------CTGAATGGCC
NNTNTCATGAATGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGAATGGCC-----
CTGATTGGTCNATTT
 A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGAATGGCC---
-TGATTGGCTANN
 A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAATGGCC--
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CTGAATGGCC-
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CTGAATGGCC--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGAATGGCC
CCGATTGGCT
 A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGAATGGCC
TTGATTGN--
 A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGAATGGCC---
NNAATTAATGACCNNN
 A C G T A C G T A C G T A T G C C G A T C A T G T C G A C G T A C A G T C A T G C A T G T A G C G T A C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C