Information for 9-GTTCCTHATTGCT (Motif 17)

A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T
Reverse Opposite:
C G T A C T A G A G T C C G T A C T G A A C G T C A G T C G T A C T A G A C T G C G T A G T C A A T G C
p-value:1e-8
log p-value:-2.036e+01
Information Content per bp:1.846
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.0 +/- 25.0bp
Average Position of motif in Background39.7 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTTCCTHATTGCT----
-NNNTTAATTGGTTTTT
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

PH0005.1_Barhl1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTCCTHATTGCT----
-GNNTTAATTGGTTGTT
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

GBX2/MA0890.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTTCCTHATTGCT
---NNTAATTGNN
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T
A C G T A C G T A C G T T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T

Hmx1/MA0896.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTCCTHATTGCT---
ANNCATTAATTGCTNGN
 A C G T A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTCCTHATTGCT---
ANNCATTAATTGCTNGN
 A C G T A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTTCCTHATTGCT----
NNTGTTCTTTTTTGTTTACT
 A C G T A C G T A C G T A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G C A T G C T A C G A T A T C G G C A T C G A T G A T C G A C T G C A T A G C T A G C T A G C T G C A T T C A G A C G T A C G T A C G T C T G A G A T C G C A T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GTTCCTHATTGCT-
----NTAATKGTTT
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GTTCCTHATTGCT------
-----TAATTGTTCTAAAC
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.61
Offset:7
Orientation:forward strand
Alignment:GTTCCTHATTGCT-
-------ATTGTTA
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GTTCCTHATTGCT
----CTAATCGNT
 A T C G C A G T A C G T A G T C A G T C A C G T G C T A C G T A A G C T A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T