Information for 1-CWTTGTTATGCAAATB (Motif 1)

G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T
Reverse Opposite:
T G C A G T C A G A C T G A C T C G A T T A C G G T A C G C T A G A C T C T G A G C T A A T G C G C T A G T C A C G A T C T A G
p-value:1e-168
log p-value:-3.878e+02
Information Content per bp:1.632
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif25.51%
Number of Background Sequences with motif322.7
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets52.2 +/- 23.0bp
Average Position of motif in Background50.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.99
Offset:0
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB
CTTTGTTATGCAAAT-
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:CWTTGTTATGCAAATB
CATTGTTATGCAAAT-
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:CWTTGTTATGCAAATB
-----TTATGCAAAT-
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.77
Offset:5
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB-
-----TTATGCAAATTA
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.76
Offset:5
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB-
-----TTATGCAAATTA
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.76
Offset:6
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB--
------TATGCWAATBAV
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB---
---TTGTATGCAAATTAGA
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB---
---TTGTATGCAAATTAGA
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.75
Offset:6
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB
------TATGCAAAT-
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CWTTGTTATGCAAATB
----AATATGCAAATT
 G A T C C G T A C A G T C G A T T A C G C G A T G A C T C T G A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A C G T
A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T