Information for 7-AGACAGACCAGGGGMC (Motif 10)

C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
Reverse Opposite:
A T C G C A G T A G T C A G T C A G T C G T A C C A G T C A T G C T A G A C G T A T G C A C G T A C T G C G A T A T G C C G A T
p-value:1e-9
log p-value:-2.206e+01
Information Content per bp:1.728
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets45.6 +/- 24.6bp
Average Position of motif in Background47.4 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGACAGACCAGGGGMC-
---NTGCCCANNGGTNA
 C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C A C G T
A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGACAGACCAGGGGMC
-CACAGN---------
 C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGACAGACCAGGGGMC
--BCAGACWA------
 C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGACAGACCAGGGGMC
TGACANARRCCAGRC---
 A C G T A C G T C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGACCAGGGGMC
CCAGACAG----------
 A C G T A C G T C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGACAGACCAGGGGMC
---CACAGCAGGGGG-
 C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGACAGACCAGGGGMC
TTGACAGC---------
 A C G T C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGACCAGGGGMC
CCAGACRSVB--------
 A C G T A C G T C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGACAGACCAGGGGMC
TTGACAG----------
 A C G T C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGACAGACCAGGGGMC
ATGCCAGACN-------
 A C G T C G T A A T C G C G T A A G T C C G T A A T C G G T C A A G T C G A T C G T C A A C T G C T A G C T A G C T A G G T C A A T G C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T