Homer de novo Motif Results (hs_EmbryonicStemCell_H9hESC_normal_EOMES_SRX035159_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 751
Total background sequences = 47763
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G T A C T G A T C A G T C A G G C A T T C A G G C T A C A G T C G T A C T G A 1e-52-1.201e+0239.68%16.29%25.7bp (30.2bp)Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.896)
More Information | Similar Motifs Found		motif file (matrix)
2 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C 1e-26-6.132e+0121.44%8.55%24.6bp (31.0bp)Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer(0.796)
More Information | Similar Motifs Found		motif file (matrix)
3 G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G 1e-26-6.021e+0113.05%3.67%26.2bp (29.5bp)ZIC4/MA0751.1/Jaspar(0.843)
More Information | Similar Motifs Found		motif file (matrix)
4 C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A 1e-17-4.101e+015.73%1.06%29.4bp (27.8bp)Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer(0.858)
More Information | Similar Motifs Found		motif file (matrix)
5 A G T C A G C T A C G T C G T A C G T A A C G T A G C T A C T G A C G T C G T A A C G T A T C G A G T C 1e-16-3.835e+011.07%0.01%21.3bp (19.1bp)Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer(0.702)
More Information | Similar Motifs Found		motif file (matrix)
6 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A 1e-16-3.764e+010.93%0.00%22.3bp (4.9bp)PH0013.1_Cdx2/Jaspar(0.640)
More Information | Similar Motifs Found		motif file (matrix)
7 A T C G C G A T A C T G A C G T C T A G C G T A G T C A A C G T C T A G C T G A 1e-15-3.511e+014.13%0.63%24.9bp (30.6bp)TBX21/MA0690.1/Jaspar(0.726)
More Information | Similar Motifs Found		motif file (matrix)
8 A T C G A G T C G T A C C G T A C T A G C T G A A C T G G T C A G A T C A G T C A C G T A G T C C T G A C T A G A G C T T G C A 1e-14-3.280e+010.93%0.00%20.6bp (21.1bp)PB0126.1_Gata5_2/Jaspar(0.529)
More Information | Similar Motifs Found		motif file (matrix)
9 C G T A C G T A A T C G A T C G A T C G A C G T C G T A C T A G C G T A A C G T C G T A G T C A A C T G 1e-13-3.153e+010.80%0.00%11.3bp (0.0bp)GATA3/MA0037.2/Jaspar(0.721)
More Information | Similar Motifs Found		motif file (matrix)
10 A C G T C T A G T C G A C G T A C T G A C G T A A C T G C T G A C T A G C G T A C G T A C G T A C T A G A C T G A C G T A C T G 1e-13-3.153e+010.80%0.00%29.1bp (0.0bp)PRDM1/MA0508.1/Jaspar(0.638)
More Information | Similar Motifs Found		motif file (matrix)
11 G A T C G A T C G C A T A T C G G A C T A C G T C T G A C G T A A G C T T G A C 1e-13-3.125e+016.79%1.93%24.4bp (31.3bp)PH0140.1_Pknox1/Jaspar(0.702)
More Information | Similar Motifs Found		motif file (matrix)
12 T A C G G T C A A T G C C G T A T C G A A C T G G A C T C G T A A G T C A C G T A C G T A C T G A C G T A C G T C G T A G T A C 1e-13-3.058e+011.20%0.02%22.8bp (18.1bp)PB0152.1_Nkx3-1_2/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
13 T C A G T C G A C G A T A C T G T A G C C G A T A C T G C G T A A G C T C T G A G T A C A G T C C G T A A T C G C G T A G C T A 1e-13-3.050e+011.33%0.03%25.4bp (22.6bp)PH0166.1_Six6_2/Jaspar(0.601)
More Information | Similar Motifs Found		motif file (matrix)
14 C T A G A C T G A T C G C G T A C T A G C T G A A C T G A G T C G T C A A C T G A C T G A T C G A C G T C G T A C G T A C G T A 1e-13-2.997e+010.93%0.01%20.8bp (26.2bp)PB0157.1_Rara_2/Jaspar(0.516)
More Information | Similar Motifs Found		motif file (matrix)
15 A G T C A G T C A C G T A C T G A G T C A C G T A T C G C G T A A C T G C T G A 1e-12-2.943e+014.39%0.89%24.7bp (31.7bp)Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer(0.835)
More Information | Similar Motifs Found		motif file (matrix)
16 A C T G A G C T A C G T C A G T A G C T G T A C C G T A T A C G T C G A A G T C C G T A A G C T T A G C A G C T G T A C C G A T 1e-12-2.926e+011.73%0.08%16.1bp (19.6bp)SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar(0.550)
More Information | Similar Motifs Found		motif file (matrix)
17 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T 1e-12-2.797e+010.93%0.01%18.5bp (8.8bp)HOXA5/MA0158.1/Jaspar(0.595)
More Information | Similar Motifs Found		motif file (matrix)
18 * A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A 1e-11-2.734e+011.07%0.02%21.3bp (32.9bp)PB0060.1_Smad3_1/Jaspar(0.611)
More Information | Similar Motifs Found		motif file (matrix)
19 * C A G T A G T C T C G A G A T C T C A G A T G C A G T C A G C T G A T C G A C T 1e-11-2.689e+013.06%0.46%26.8bp (28.4bp)MGA/MA0801.1/Jaspar(0.784)
More Information | Similar Motifs Found		motif file (matrix)
20 * G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A 1e-11-2.635e+011.86%0.13%23.8bp (28.1bp)PB0207.1_Zic3_2/Jaspar(0.684)
More Information | Similar Motifs Found		motif file (matrix)
21 * C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C G T A G C T A G T C A G T C A C G T A C G T 1e-11-2.558e+010.67%0.00%18.0bp (0.0bp)T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer(0.600)
More Information | Similar Motifs Found		motif file (matrix)
22 * A G C T A T C G A C G T A C G T A G T C T C G A C G T A A G C T G A T C A G T C A G C T C G T A A C G T T A G C C G A T C G T A 1e-11-2.558e+010.67%0.00%22.4bp (0.0bp)PB0023.1_Gata6_1/Jaspar(0.689)
More Information | Similar Motifs Found		motif file (matrix)
23 * A G T C A C G T A C T G A C T G T C G A C A G T A G T C C G A T T A C G C G A T C T G A C T A G A G C T T G A C A G T C A G T C 1e-11-2.558e+010.67%0.00%19.6bp (5.6bp)GFY(?)/Promoter/Homer(0.585)
More Information | Similar Motifs Found		motif file (matrix)
24 * A C G T A G T C G T C A C T A G T A G C G T A C A C G T A C G T G T A C G T A C 1e-11-2.552e+013.33%0.58%31.3bp (26.9bp)POL008.1_DCE_S_I/Jaspar(0.639)
More Information | Similar Motifs Found		motif file (matrix)
25 * A G T C G T A C C G T A A T G C A C G T A C G T G T A C A C G T A G T C C G T A A T C G A C G T A C T G 1e-10-2.496e+010.80%0.01%27.1bp (14.8bp)PB0099.1_Zfp691_1/Jaspar(0.579)
More Information | Similar Motifs Found		motif file (matrix)
26 * A C G T A T C G C T G A A T G C C G A T A G T C A C G T A C G T A G T C A C G T A G T C G T C A C G T A 1e-10-2.464e+011.46%0.08%23.0bp (30.2bp)BATF::JUN/MA0462.1/Jaspar(0.627)
More Information | Similar Motifs Found		motif file (matrix)
27 * G T A C A G T C C G T A A T C G T G A C C G A T C T A G C G T A A T G C G C T A A C G T A C G T A C G T A T C G G A T C T C G A 1e-10-2.410e+010.93%0.02%22.0bp (23.6bp)Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer(0.619)
More Information | Similar Motifs Found		motif file (matrix)
28 * A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G 1e-10-2.410e+010.93%0.02%28.9bp (32.8bp)PB0170.1_Sox17_2/Jaspar(0.644)
More Information | Similar Motifs Found		motif file (matrix)
29 * A T G C T A G C A G T C C G T A A T C G C A G T C T A G A C T G C T A G T G A C 1e-10-2.370e+017.72%2.92%27.3bp (29.2bp)TFAP2A(var.3)/MA0872.1/Jaspar(0.691)
More Information | Similar Motifs Found		motif file (matrix)
30 * A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A 1e-10-2.325e+010.80%0.01%24.6bp (28.1bp)NRL/MA0842.1/Jaspar(0.587)
More Information | Similar Motifs Found		motif file (matrix)
31 * A C T G A C T G A T C G C T A G T A G C A C T G A C T G C G T A A C T G A T C G C G A T A C T G C G A T 1e-10-2.325e+010.80%0.01%25.0bp (17.7bp)POL003.1_GC-box/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)
32 * A T C G C G T A T A G C A G T C G C A T A T G C C G A T A C G T A G C T A G C T G T C A G T A C A G T C G T C A A T G C A G T C 1e-10-2.305e+013.20%0.61%22.7bp (27.5bp)ZBTB7C/MA0695.1/Jaspar(0.614)
More Information | Similar Motifs Found		motif file (matrix)
33 * A C T G T G A C C G T A A C T G T C G A G C A T A G T C G T C A G T A C C G T A T A G C G T C A T A C G A G T C C G T A C A T G 1e-9-2.202e+011.46%0.10%21.6bp (29.8bp)PB0205.1_Zic1_2/Jaspar(0.572)
More Information | Similar Motifs Found		motif file (matrix)
34 * A T C G A G T C A C G T A T G C A G C T C G T A A C G T G A T C A C T G A T C G 1e-9-2.133e+011.86%0.20%20.9bp (25.9bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.645)
More Information | Similar Motifs Found		motif file (matrix)
35 * A C G T A C T G C G A T C G A T T C G A C G A T A G T C A C G T A C G T C G A T 1e-9-2.108e+015.46%1.79%24.5bp (29.6bp)FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(0.717)
More Information | Similar Motifs Found		motif file (matrix)
36 * A C T G A G T C G T A C C G T A A C T G C T G A A T C G A G T C G A T C C A G T A C T G A C T G C T G A C T A G A T C G T C A G 1e-9-2.074e+011.60%0.14%19.3bp (22.5bp)ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer(0.579)
More Information | Similar Motifs Found		motif file (matrix)
37 * C T A G A T C G A C G T C A T G C T G A A C T G A T C G T G A C G T C A C G T A C A G T C A T G A C G T A T C G A C G T A C T G 1e-8-2.011e+010.67%0.01%23.9bp (6.3bp)ATF4/MA0833.1/Jaspar(0.554)
More Information | Similar Motifs Found		motif file (matrix)
38 * A C T G C G T A C G T A A T C G C G A T A C T G A G T C A C T G A G T C G T A C 1e-8-1.887e+010.93%0.03%24.0bp (28.0bp)POL006.1_BREu/Jaspar(0.664)
More Information | Similar Motifs Found		motif file (matrix)
39 * A T C G A T G C A T C G A G T C T G C A A C T G A T G C A C G T A C T G C T A G 1e-8-1.856e+012.80%0.59%24.3bp (31.6bp)NHLH1/MA0048.2/Jaspar(0.799)
More Information | Similar Motifs Found		motif file (matrix)
40 * T A G C A T C G A T G C T G A C T G A C A T C G T C G A A T G C A C T G A C T G G T A C T A C G A T C G T G C A C T G A A T C G 1e-7-1.774e+012.80%0.62%23.3bp (25.4bp)ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer(0.575)
More Information | Similar Motifs Found		motif file (matrix)
41 * C G T A A C G T C G A T A C T G A C T G T C G A A C G T A C G T C G T A A G T C 1e-7-1.764e+010.93%0.04%21.6bp (30.3bp)Phox2b/MA0681.1/Jaspar(0.744)
More Information | Similar Motifs Found		motif file (matrix)
42 * A C T G A C T G A C T G C G T A A C T G A G T C A G T C A G T C A C T G A C G T 1e-6-1.427e+010.40%0.00%22.9bp (0.0bp)POL013.1_MED-1/Jaspar(0.701)
More Information | Similar Motifs Found		motif file (matrix)
43 * A G T C C G T A A C G T C G T A C G T A A C G T A G T C A G T C A C G T A G T C 1e-5-1.342e+010.53%0.01%27.0bp (27.7bp)GSC2/MA0891.1/Jaspar(0.770)
More Information | Similar Motifs Found		motif file (matrix)
44 * A G T C C G A T A T C G A C G T G T C A C A G T T C G A T G C A A G T C G T A C C G T A T C A G A C T G 1e-5-1.220e+012.13%0.54%22.5bp (29.6bp)FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer(0.591)
More Information | Similar Motifs Found		motif file (matrix)
45 * C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C G T A C G T A C G T 1e-5-1.191e+010.67%0.03%22.0bp (30.8bp)Foxd3/MA0041.1/Jaspar(0.868)
More Information | Similar Motifs Found		motif file (matrix)