Information for 13-CTGTGGCCAVACA (Motif 18)

A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C A C G T A C T G T C A G A G T C G T A C C G T A A T G C C T G A A T C G
p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.823
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.4 +/- 21.3bp
Average Position of motif in Background39.7 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGTGGCCAVACA-----
-CAAATCCAGACATCACA
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CTGTGGCCAVACA-
------CCAGACAG
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CTGTGGCCAVACA---
------CCAGACRSVB
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGTGGCCAVACA
-AGGTGHCAGACA
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGTGGCCAVACA-
-AGGTGNCAGACAG
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTGTGGCCAVACA
--CTTGGCAA---
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGTGGCCAVACA
-ACTAGCCAATCA
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGTGGCCAVACA
GTCTGTGGTTT----
 A C G T A C G T A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGGCCAVACA
NNHTGTGGTTWN---
 A C G T A C G T A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CTGTGGCCAVACA-
------BCAGACWA
 A T G C A G C T A T C G A C G T A C T G A C T G A G T C A G T C C G T A T A C G C G T A G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A