Information for 18-TGCTRAKCTGWAA (Motif 30)

A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
Reverse Opposite:
A G C T A C G T C G A T A G T C C G T A A C T G G T C A A C G T A G C T C T G A A C T G A T G C C G T A
p-value:1e-10
log p-value:-2.325e+01
Information Content per bp:1.864
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 24.6bp
Average Position of motif in Background48.8 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRL/MA0842.1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGCTRAKCTGWAA
AATTTGCTGAC------
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCTRAKCTGWAA
TTCTTATCTGT--
 A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
A G C T A G C T A G T C A G C T A C G T C G T A A C G T A G T C C G A T A T C G G A C T A C G T A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTRAKCTGWAA
AAAWWTGCTGACWWD---
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
C T G A C G T A C G T A G C T A G C A T G C A T T C A G G T A C G C A T C A T G C G T A A T G C G C A T G C A T C A T G A C G T A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGCTRAKCTGWAA
AGATTCTTATCTGT--
 A C G T A C G T A C G T A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGCTRAKCTGWAA
TATGCWAATBAV---
 A C G T A C G T A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGCTRAKCTGWAA
WATGCAAATGAG---
 A C G T A C G T A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCTRAKCTGWAA
NCCTTATCTG---
 A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGCTRAKCTGWAA
-GCTAATCC----
 A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGCTRAKCTGWAA
NNCTTATCTN---
 A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGCTRAKCTGWAA
AAANTGCTGACTNAG--
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T C T G A C G T A A C G T A G T C A C G T A C T G G C T A C G T A C T G A
C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G A C G T A C G T