Information for 3-GAVCTAAGBCAATAAA (Motif 6)

C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A
Reverse Opposite:
C G A T A G C T A C G T C T G A A G C T C G A T C T A G T G A C A G T C A G C T C A G T C G T A C T A G A G T C A G C T A G T C
p-value:1e-16
log p-value:-3.764e+01
Information Content per bp:1.698
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.3 +/- 22.3bp
Average Position of motif in Background51.5 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA----
----AAAGGTAATAAAATTT
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA----
----TAAGGTAATAAAATTA
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA------
-----AATGCAATAAAATTTAT
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA-
------AAGCCATAAAA
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA-----
-----AACCCAATAAAATTCG
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA--
-------GGTAATAAAAA
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

FOXC2/MA0846.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA
----TAAGTAAACAAA
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A
A C G T A C G T A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA--
--------CCAATAAAAA
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA-
--------GCAATAAAA
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.58
Offset:8
Orientation:forward strand
Alignment:GAVCTAAGBCAATAAA--
--------CCAATAAAAC
 C T A G C T G A T C A G A G T C C G A T G C T A C T G A A C T G A C T G A G T C C G T A C T G A G A C T T C G A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C