Information for 3-TNTCTCTCAC (Motif 2)

G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C
Reverse Opposite:
A T C G G A C T A C T G C G T A T A C G G T C A T C A G C G T A G C A T C G T A
p-value:1e-26
log p-value:-6.132e+01
Information Content per bp:1.626
Number of Target Sequences with motif161.0
Percentage of Target Sequences with motif21.44%
Number of Background Sequences with motif4084.2
Percentage of Background Sequences with motif8.55%
Average Position of motif in Targets53.0 +/- 24.6bp
Average Position of motif in Background49.6 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TNTCTCTCAC--
TGTCTGDCACCT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TNTCTCTCAC--
CTGTCTGTCACCT
 A C G T G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TNTCTCTCAC--
--KTTCACACCT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

TBX2/MA0688.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TNTCTCTCAC---
--TTTCACACCTN
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TNTCTCTCAC------
NNTTTTCACACCTTNNN
 A C G T G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TNTCTCTCAC---
NTTTTCACACCTT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

MGA/MA0801.1/Jaspar

Match Rank:7
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TNTCTCTCAC--
----TCACACCT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

TBR1/MA0802.1/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TNTCTCTCAC--
--TTTCACACCT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TNTCTCTCAC--
----TCACACCT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

TBX4/MA0806.1/Jaspar

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TNTCTCTCAC--
----TCACACCT
 G C A T C G T A C G A T A G T C C A G T A T G C G C A T G T A C C T G A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T