Information for 14-AAAGVACACAGTRGGA (Motif 20)

G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A
Reverse Opposite:
C A G T A G T C A G T C A G C T G T C A A G T C C G A T A C T G C G A T A C T G A C G T A C T G G A T C A G C T G C A T A C G T
p-value:1e-11
log p-value:-2.635e+01
Information Content per bp:1.687
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif63.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets42.9 +/- 23.8bp
Average Position of motif in Background42.5 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AAAGVACACAGTRGGA--
---GAGCACAGCAGGACA
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AAAGVACACAGTRGGA--
---CCACACAGCAGGAGA
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.66
Offset:6
Orientation:forward strand
Alignment:AAAGVACACAGTRGGA--
------CACAGCAGGGGG
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AAAGVACACAGTRGGA
-----DCTCAGCAGG-
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A
A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AAAGVACACAGTRGGA----
-----DCHCAGCAGGRGGCC
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AAAGVACACAGTRGGA--
---CCACACAGCAGGAGA
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AAAGVACACAGTRGGA
--GGAACAAAGR----
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AAAGVACACAGTRGGA----
----TGCGGAGTGGGACTGG
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAAGVACACAGTRGGA
ATAAGAACAAAGGACTA
 A C G T G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAAGVACACAGTRGGA
--AAAACAAAGG----
 G T C A C G T A C T G A C T A G T G A C T G C A G T A C G C T A G T A C C G T A C T A G A C G T T C G A A C T G A C T G G T C A
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T