Information for 4-CCCCCTGCGG (Motif 3)

G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G
Reverse Opposite:
G A T C G T A C T A C G T A G C C G T A T C A G T C A G C A T G C T A G C T A G
p-value:1e-26
log p-value:-6.021e+01
Information Content per bp:1.599
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif13.05%
Number of Background Sequences with motif1755.3
Percentage of Background Sequences with motif3.67%
Average Position of motif in Targets50.0 +/- 26.2bp
Average Position of motif in Background51.6 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC4/MA0751.1/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCGG---
GACCCCCCGCTGTGC
 A C G T A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCGG---
GGCCYCCTGCTGDGH
 A C G T A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGCGG--
CCCCCTGCTGTG
 G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCGG---
GACCCCCCGCTGCGC
 A C G T A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCGG--
GACCCCCCGCTGTG
 A C G T A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.75
Offset:-8
Orientation:forward strand
Alignment:--------CCCCCTGCGG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCGG
SNGCACCTGCHS
 A C G T A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGCGG--
TCCCCTGGGGAC
 G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCCCCTGCGG
NNCACCTGNN-
 A C G T G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGCGG-----
TCNCCTGCTGNGNNN
 G A T C G A T C G T A C A G T C A G T C G C A T A T C G A T G C C A T G C T A G A C G T A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G