Homer de novo Motif Results (hs_EmbryonicStemCell_H1hESC_normal_SOX2_SRX011616_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 746
Total background sequences = 48214
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G T A C A G T C C G T A A T G C G A C T C T G A A C T G C T G A A C G T A C T G A C T G G T A C C T G A 1e-141-3.261e+0211.93%0.13%23.9bp (26.5bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.916)
More Information | Similar Motifs Found		motif file (matrix)
2 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T 1e-120-2.765e+0217.02%0.83%22.6bp (29.3bp)OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer(0.940)
More Information | Similar Motifs Found		motif file (matrix)
3 G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C 1e-47-1.095e+0224.40%7.21%24.7bp (30.7bp)Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer(0.925)
More Information | Similar Motifs Found		motif file (matrix)
4 C G A T A C T G A G T C C G A T C T G A G C T A A C G T A C G T C G T A A T G C 1e-19-4.517e+013.62%0.30%28.8bp (33.3bp)PH0081.1_Pdx1/Jaspar(0.823)
More Information | Similar Motifs Found		motif file (matrix)
5 T G A C T C G A T G C A C G T A C T A G A G T C C G T A A G T C G C T A C G T A C G T A C T A G G T A C A G C T A C T G A G T C 1e-16-3.771e+010.94%0.00%27.6bp (0.0bp)Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer(0.637)
More Information | Similar Motifs Found		motif file (matrix)
6 A G T C A C G T G T C A A C T G A G T C A C T G A G T C A G T C C G T A C A T G A G T C A C G T C T G A 1e-13-3.159e+010.80%0.00%23.8bp (0.0bp)NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer(0.643)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T A C T G A G C T A G T C A C G T A G T C C G T A C G A T A C G T A C G T C G T A A C T G A G T C 1e-13-3.159e+010.80%0.00%20.7bp (0.0bp)Barhl1/MA0877.1/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
8 C A T G A C T G C G A T C G T A C G T A C G T A A G C T C G T A T G A C C G T A A C T G A C G T G T A C A C G T C G A T T G A C 1e-13-3.159e+010.80%0.00%29.5bp (3.6bp)FOXP1/MA0481.1/Jaspar(0.587)
More Information | Similar Motifs Found		motif file (matrix)
9 A C T G A C T G C T G A C G T A A C G T C A G T A C T G G T A C T A G C A C G T A C G T A C G T A C T G A G T C A C G T C T G A 1e-13-3.159e+010.80%0.00%24.4bp (0.0bp)ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.595)
More Information | Similar Motifs Found		motif file (matrix)
10 A T C G C A G T A T C G A G C T A C G T A T G C T G A C G A T C C G A T A C G T C G A T G T C A G C T A G C A T T A G C C G T A 1e-13-3.091e+012.14%0.14%24.6bp (27.7bp)Hoxa9/MA0594.1/Jaspar(0.556)
More Information | Similar Motifs Found		motif file (matrix)
11 G T C A A T G C G T C A G T C A C G A T A T C G A G T C G A C T G A C T G A C T C A T G A C G T A G C T C G T A G C T A C A G T 1e-12-2.956e+013.49%0.53%21.3bp (28.6bp)SOX10/MA0442.1/Jaspar(0.620)
More Information | Similar Motifs Found		motif file (matrix)
12 T A G C C G T A C A T G C G A T A T C G C G T A A C T G A C T G C T G A T C A G A C G T C G T A C G T A C T G A C G T A A T C G 1e-12-2.848e+011.07%0.02%22.5bp (9.6bp)PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer(0.573)
More Information | Similar Motifs Found		motif file (matrix)
13 * A C G T C T A G A C T G A C G T C T G A C G T A A C G T A C T G A C T G C G A T 1e-11-2.746e+015.09%1.26%28.5bp (29.0bp)Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer(0.723)
More Information | Similar Motifs Found		motif file (matrix)
14 * A C G T A T C G C T G A T C A G C G T A G T C A T G C A A C G T A C G T A C G T A C G T G T A C A C G T A C G T A C G T A C T G 1e-11-2.745e+010.80%0.00%13.0bp (18.2bp)PB0083.1_Tcf7_1/Jaspar(0.559)
More Information | Similar Motifs Found		motif file (matrix)
15 * G C A T G T C A C T G A G T A C G T C A C G A T T G C A C G T A G A T C C G T A 1e-11-2.628e+013.35%0.57%26.6bp (28.1bp)PB0121.1_Foxj3_2/Jaspar(0.752)
More Information | Similar Motifs Found		motif file (matrix)
16 * C T A G C T A G C T A G A C T G G T C A A C G T A C G T C T G A C T G A A T C G 1e-11-2.608e+011.88%0.14%25.0bp (26.3bp)PITX3/MA0714.1/Jaspar(0.875)
More Information | Similar Motifs Found		motif file (matrix)
17 * C G T A A C T G C G T A A C T G A C T G A G T C A G T C C G T A C A G T A C G T A C T G A C G T C T A G 1e-11-2.605e+011.61%0.09%23.9bp (27.9bp)Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer(0.695)
More Information | Similar Motifs Found		motif file (matrix)
18 * C T A G C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C G T C G T A G T A C A G T C A G T C 1e-11-2.563e+010.67%0.00%18.1bp (2.0bp)Hoxd3/MA0912.1/Jaspar(0.642)
More Information | Similar Motifs Found		motif file (matrix)
19 * A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C 1e-11-2.563e+010.67%0.00%24.0bp (0.0bp)THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer(0.616)
More Information | Similar Motifs Found		motif file (matrix)
20 * G T C A C T G A A C G T A T G C A G T C A G C T G A T C C G T A C A T G A C T G C T G A C G T A C G A T 1e-10-2.493e+012.28%0.25%24.6bp (30.2bp)Stat6/MA0520.1/Jaspar(0.648)
More Information | Similar Motifs Found		motif file (matrix)
21 * C T G A G A T C C G T A T G A C A G T C G T A C A G T C C G T A A C T G C G A T A C T G A C T G A T C G 1e-10-2.423e+011.07%0.03%17.3bp (21.8bp)EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.676)
More Information | Similar Motifs Found		motif file (matrix)
22 * A G C T A C G T A G T C G T A C C G T A G T A C A G T C G T A C G T A C G T C A C T G A A T C G A C G T 1e-10-2.389e+011.47%0.08%24.2bp (27.2bp)SPIB/MA0081.1/Jaspar(0.581)
More Information | Similar Motifs Found		motif file (matrix)
23 * T G A C G C T A T G A C G C T A C T A G A T G C C G T A C A T G T C A G T C A G 1e-10-2.377e+014.29%1.05%22.7bp (32.8bp)Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.949)
More Information | Similar Motifs Found		motif file (matrix)
24 * A T G C C G T A T G A C C T A G A G T C G T A C G T A C G A T C A C G T G C A T A C G T C G A T G T A C A C G T A G C T G C T A 1e-10-2.361e+011.07%0.03%20.5bp (27.2bp)KLF13/MA0657.1/Jaspar(0.653)
More Information | Similar Motifs Found		motif file (matrix)
25 * C G A T C A G T C T G A A T C G A T G C A T C G T G C A C G T A C T A G T C A G 1e-10-2.356e+013.08%0.54%26.7bp (31.9bp)HLF/MA0043.2/Jaspar(0.652)
More Information | Similar Motifs Found		motif file (matrix)
26 * C G T A A C G T A T G C A C G T G T C A C T G A A C G T A C G T C G T A A G C T A T G C A C G T A C T G 1e-10-2.331e+010.80%0.01%21.1bp (19.8bp)PH0152.1_Pou6f1_2/Jaspar(0.698)
More Information | Similar Motifs Found		motif file (matrix)
27 * A C G T A G T C G T C A A C G T A C G T C A T G C G T A A G T C A C G T A C T G A C G T A C T G C G T A 1e-9-2.218e+010.67%0.00%16.1bp (15.1bp)PH0073.1_Hoxc9/Jaspar(0.640)
More Information | Similar Motifs Found		motif file (matrix)
28 * A C G T A C G T A G T C A G T C G T C A A C G T A G T C C G T A C G T A A G T C A G T C A G C T A G C T 1e-9-2.218e+010.67%0.01%25.1bp (11.8bp)PH0134.1_Pbx1/Jaspar(0.658)
More Information | Similar Motifs Found		motif file (matrix)
29 * C G A T C T A G T G A C G T C A C G T A C T G A A C T G G T C A G T C A A T C G A C G T A C T G A T C G C A G T C G A T A G C T 1e-9-2.218e+010.67%0.01%20.1bp (4.2bp)GRHL1/MA0647.1/Jaspar(0.537)
More Information | Similar Motifs Found		motif file (matrix)
30 * T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A 1e-9-2.205e+012.01%0.22%24.9bp (29.3bp)PB0079.1_Sry_1/Jaspar(0.546)
More Information | Similar Motifs Found		motif file (matrix)
31 * G T C A A T G C C T G A T C A G C G A T C A T G C A G T A C T G G T C A C T G A C G T A C T G A A T G C C G T A C G A T G A T C 1e-9-2.201e+011.34%0.07%12.1bp (30.0bp)Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer(0.616)
More Information | Similar Motifs Found		motif file (matrix)
32 * G T A C A C G T A C G T A C G T G C A T T G C A A G C T A G T C T A G C A G C T 1e-9-2.093e+013.35%0.74%27.2bp (27.4bp)Tcf7/MA0769.1/Jaspar(0.697)
More Information | Similar Motifs Found		motif file (matrix)
33 * T A G C A C G T A C T G C G A T C T A G G T C A C G T A C G T A T C A G A T C G 1e-8-2.055e+013.22%0.69%25.3bp (30.7bp)Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.697)
More Information | Similar Motifs Found		motif file (matrix)
34 * A G T C A G T C A G T C A C G T A G T C A G T C G T A C A G T C A C G T A C G T A C T G A G T C A G T C 1e-8-1.985e+010.54%0.00%26.3bp (0.0bp)SP2/MA0516.1/Jaspar(0.690)
More Information | Similar Motifs Found		motif file (matrix)
35 * C G T A C T A G A G T C A C G T A C T G C T A G A G T C A C G T A C T G A T G C C G T A A C T G C G T A 1e-8-1.985e+010.54%0.00%27.2bp (2.6bp)Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer(0.590)
More Information | Similar Motifs Found		motif file (matrix)
36 * C T A G A C T G C G T A A T G C G T C A A G T C C G T A C T A G A C G T A C T G A C G T A G C T G T A C A G T C C G T A C G T A 1e-8-1.985e+010.54%0.00%15.2bp (0.0bp)NR3C2/MA0727.1/Jaspar(0.739)
More Information | Similar Motifs Found		motif file (matrix)
37 * A G C T A G C T T C G A C G T A C G A T C T A G T A G C G T C A T C G A A G T C T C G A A C G T C G T A G C T A C T G A T A C G 1e-8-1.894e+010.94%0.03%25.1bp (23.6bp)CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer(0.554)
More Information | Similar Motifs Found		motif file (matrix)
38 * C G T A C T A G C G T A A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C 1e-7-1.709e+010.54%0.01%23.9bp (25.4bp)Sox5/MA0087.1/Jaspar(0.684)
More Information | Similar Motifs Found		motif file (matrix)
39 * A C G T A C T G T C A G C G T A A C G T A G C T A C G T A C T G A G T C G T A C A C G T A C G T A C G T 1e-6-1.577e+010.94%0.05%31.6bp (21.4bp)POU2F2/MA0507.1/Jaspar(0.733)
More Information | Similar Motifs Found		motif file (matrix)
40 * A C G T A G T C A C G T C G T A A C T G C G T A A C G T A C G T A C T G A C G T 1e-5-1.346e+010.54%0.01%19.8bp (33.8bp)PB0090.1_Zbtb12_1/Jaspar(0.684)
More Information | Similar Motifs Found		motif file (matrix)
41 * A C G T A C G T A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A 1e-5-1.275e+010.54%0.01%32.8bp (16.8bp)FOS::JUN/MA0099.2/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)