Information for 13-GGTAKWTKRCCTC (Motif 19)

A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A T C G A G C T G T C A C G T A C G T A G T C A A C G T C G T A G T A C A G T C
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.4 +/- 24.0bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC-
------TGACCTYA
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC-
------TGACCYCT
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTAKWTKRCCTC
AGGTCANTGACCTN
 A C G T A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC
------TGACCT-
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC-----
-NNANTTGACCCCTNNNN
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

CREB1/MA0018.2/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC-
------TGACGTCA
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A

JUN/MA0488.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC-----
-----ATGACATCATCNN
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC---
------TGACCTTGAT
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC------
----NATGACATCATCNNN
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GGTAKWTKRCCTC
-----GTGACCTT
 A C T G A C T G A C G T C G T A A C G T C G A T A C G T A C G T C T G A A T G C A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T