Information for 4-AACAATGGAC (Motif 3)

G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
Reverse Opposite:
C A T G A G C T A T G C G A T C C G T A C G A T A C G T T C A G A C G T A C G T
p-value:1e-47
log p-value:-1.095e+02
Information Content per bp:1.659
Number of Target Sequences with motif182.0
Percentage of Target Sequences with motif24.40%
Number of Background Sequences with motif3456.6
Percentage of Background Sequences with motif7.21%
Average Position of motif in Targets48.9 +/- 24.7bp
Average Position of motif in Background49.9 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGAC
GAACAATGGN-
 A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGAC
RNAACAATGG--
 A C G T A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGGAC
VRAACAATGG--
 A C G T A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----AACAATGGAC--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-AACAATGGAC
RAACAATGGN-
 A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----AACAATGGAC--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----AACAATGGAC--
AATGAACAATGGAATT
 A C G T A C G T A C G T A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:AACAATGGAC
AACAAT----
 G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:AACAATGGAC
RACAAWGG--
 G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGGAC
GAACAATGG--
 A C G T G T C A C G T A A G T C C G T A C G T A C G A T C T A G T A C G T C G A G T A C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T