Information for 20-CAGTAMARTCACARAA (Motif 30)

T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
Reverse Opposite:
A G C T C A G T A G C T C G A T A T C G A C G T A C T G C G T A G A C T C G A T A C T G A C G T T C G A G A T C A C G T A T C G
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.675
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif106.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets41.1 +/- 24.9bp
Average Position of motif in Background46.5 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGTAMARTCACARAA
NANTATTATAATTNNN---
 A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CAGTAMARTCACARAA
NCGTATTATAATCNTA---
 A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGTAMARTCACARAA--
---AAAAATAACAAACGG
 T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CAGTAMARTCACARAA
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CAGTAMARTCACARAA
AACCCAATAAAATTCG----
 A C G T A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CAGTAMARTCACARAA
CTACCAATAAAATTCT----
 A C G T A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGTAMARTCACARAA
CCAATAAAAA-------
 A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAGTAMARTCACARAA
NNTAATTATAATNANN---
 A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A A C G T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CAGTAMARTCACARAA
GCTAATTATAATTATC---
 A C G T A C G T A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAGTAMARTCACARAA
CCAATAAAAC-------
 A C G T T A G C C G T A C A T G A G C T C G T A G T A C C G T A C T G A C G A T T G A C C G T A T A G C C G T A T C A G G T C A C T G A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T