Information for 2-CTATTGTNATGCAAAT (Motif 2)

A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T
Reverse Opposite:
G C T A C G A T A C G T C G A T T C A G G T A C C G T A G C A T C T A G G C T A T A G C G T C A C G T A C G A T C T G A C T A G
p-value:1e-120
log p-value:-2.765e+02
Information Content per bp:1.659
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif17.02%
Number of Background Sequences with motif398.8
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets48.7 +/- 22.6bp
Average Position of motif in Background51.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:CTATTGTNATGCAAAT
-CATTGTTATGCAAAT
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT
-CTTTGTTATGCAAAT
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.77
Offset:6
Orientation:reverse strand
Alignment:CTATTGTNATGCAAAT
------TTATGCAAAT
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT----
----TTGTATGCAAATTAGA
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT----
----TTGTATGCAAATTAGA
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.74
Offset:6
Orientation:reverse strand
Alignment:CTATTGTNATGCAAAT---
------ATATGCAAATNNN
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT----
----TTGTATGCAAATTAGA
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.74
Offset:6
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT--
------TTATGCAAATTA
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.73
Offset:7
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT---
-------TATGCWAATBAV
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.73
Offset:7
Orientation:forward strand
Alignment:CTATTGTNATGCAAAT
-------TATGCAAAT
 A G T C G A C T G C T A C G A T A C G T A T C G C G A T G A T C C G T A C G A T C A T G A G T C G C T A C G T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T