Homer de novo Motif Results (hs_EmbryonicStemCell_H9hESC_normal_SOX2_SRX277140_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 795
Total background sequences = 46880
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A 1e-261-6.013e+0255.22%7.88%23.5bp (33.3bp)Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer(0.948)
More Information | Similar Motifs Found
motif file (matrix)
2 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T 1e-90-2.087e+027.17%0.08%22.3bp (29.5bp)Pou5f1::Sox2/MA0142.1/Jaspar(0.959)
More Information | Similar Motifs Found
motif file (matrix)
3 A G T C G T A C G C A T T C A G A T G C C A G T C T A G C A G T A C T G G T C A 1e-28-6.516e+0118.62%6.74%26.3bp (31.1bp)Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.926)
More Information | Similar Motifs Found
motif file (matrix)
4 C T A G G T A C A C G T A C T G C T A G A C T G A G T C A G T C A G T C A C G T A C T G T A G C A G C T 1e-12-2.901e+011.01%0.01%28.3bp (17.5bp)PB0099.1_Zfp691_1/Jaspar(0.624)
More Information | Similar Motifs Found
motif file (matrix)
5 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A 1e-12-2.895e+012.01%0.15%23.3bp (23.7bp)PB0098.1_Zfp410_1/Jaspar(0.764)
More Information | Similar Motifs Found
motif file (matrix)
6 * C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G 1e-11-2.677e+011.26%0.04%17.5bp (32.4bp)Crx/MA0467.1/Jaspar(0.898)
More Information | Similar Motifs Found
motif file (matrix)
7 * A G T C C G T A A C T G A C T G C G A T A T C G C T A G A G T C C G T A C T G A A C G T A C G T C T G A 1e-10-2.520e+010.63%0.00%29.2bp (3.2bp)Msx3/MA0709.1/Jaspar(0.681)
More Information | Similar Motifs Found
motif file (matrix)
8 * A G T C G T C A A G T C A G T C G A C T A G T C A G T C G T C A A C T G A G T C A C G T A C T G A G C T C A G T C T A G A G C T 1e-10-2.520e+010.63%0.00%17.0bp (0.0bp)ZIC1/MA0696.1/Jaspar(0.730)
More Information | Similar Motifs Found
motif file (matrix)
9 * C T A G G T C A C T A G A T G C A G T C C G T A C G T A A T C G A C G T A T C G 1e-10-2.458e+012.89%0.48%27.1bp (30.1bp)Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.616)
More Information | Similar Motifs Found
motif file (matrix)
10 * A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A 1e-9-2.217e+012.01%0.24%24.6bp (29.4bp)PB0170.1_Sox17_2/Jaspar(0.707)
More Information | Similar Motifs Found
motif file (matrix)
11 * A G T C A C T G A G T C G T A C G C T A A G T C A G T C A C T G A G T C A T G C A G T C A T G C G A C T A T G C G T A C C A G T 1e-9-2.100e+011.38%0.10%21.6bp (27.9bp)PB0097.1_Zfp281_1/Jaspar(0.728)
More Information | Similar Motifs Found
motif file (matrix)
12 * C G T A A C T G C G T A A C T G C G T A A C T G A G T C A C T G C G T A A G T C A C G T A C T G A C T G 1e-8-1.950e+010.50%0.00%33.3bp (15.3bp)PB0151.1_Myf6_2/Jaspar(0.538)
More Information | Similar Motifs Found
motif file (matrix)
13 * A G T C A G C T A T G C A C G T A C G T A T C G A C G T A C G T A C T G A C T G A T C G A C G T A C T G A T C G A G C T A C T G 1e-8-1.950e+010.50%0.00%24.1bp (0.0bp)GLIS3/MA0737.1/Jaspar(0.632)
More Information | Similar Motifs Found
motif file (matrix)
14 * T G C A A G T C T A G C A G T C A G T C G T C A A C G T A C T G A C T G A C T G 1e-8-1.916e+012.01%0.30%30.4bp (29.4bp)EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.749)
More Information | Similar Motifs Found
motif file (matrix)
15 * C G A T C G A T A G T C A G T C A G T C A G C T C G A T C G T A T A G C A C G T 1e-7-1.759e+012.01%0.34%28.8bp (31.7bp)PB0162.1_Sfpi1_2/Jaspar(0.635)
More Information | Similar Motifs Found
motif file (matrix)
16 * A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A 1e-6-1.514e+010.50%0.01%6.8bp (16.8bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.643)
More Information | Similar Motifs Found
motif file (matrix)
17 * C G T A A T G C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C 1e-3-8.858e+000.25%0.00%30.4bp (8.2bp)PH0168.1_Hnf1b/Jaspar(0.746)
More Information | Similar Motifs Found
motif file (matrix)
18 * A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G 1e-3-8.858e+000.25%0.00%21.2bp (7.2bp)THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer(0.673)
More Information | Similar Motifs Found
motif file (matrix)