Information for 12-CCCTTTCATA (Motif 10)

A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A
Reverse Opposite:
A C G T C T G A A G C T A C T G C G T A C G T A C G T A C T A G C T A G A C T G
p-value:1e-9
log p-value:-2.217e+01
Information Content per bp:1.847
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif113.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets59.8 +/- 24.6bp
Average Position of motif in Background52.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCCTTTCATA----
GACCACATTCATACAAT
 A C G T A C G T A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCTTTCATA---
-CCTTTTATAGNC
 A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0040.1_Lef1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCTTTCATA----
AATCCCTTTGATCTATC
 A C G T A C G T A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTTCATA---
TNCCTTTGATCTTN
 A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T A C G T A C G T
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTTCATA-
TNCCTTTGATGT
 A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T
C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTCATA
NNGCACCTTTCTCC
 A C G T A C G T A C G T A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTCATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTCATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCTTTCATA----
ATTTCCTTTGATCTATA
 A C G T A C G T A C G T A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T A C G T A C G T A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCTTTCATA-
-CCTTTGATGT
 A G T C A G T C G A T C C G A T A C G T A C G T A G T C C T G A G A C T G T C A A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T