Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-267 | -6.165e+02 | 0.0000 | 462.0 | 58.11% | 4122.1 | 8.80% | motif file (matrix) |
svg |
2 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-229 | -5.281e+02 | 0.0000 | 421.0 | 52.96% | 3949.6 | 8.43% | motif file (matrix) |
svg |
3 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-226 | -5.224e+02 | 0.0000 | 331.0 | 41.64% | 2035.5 | 4.34% | motif file (matrix) |
svg |
4 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-210 | -4.848e+02 | 0.0000 | 400.0 | 50.31% | 3861.2 | 8.24% | motif file (matrix) |
svg |
5 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-189 | -4.367e+02 | 0.0000 | 314.0 | 39.50% | 2332.5 | 4.98% | motif file (matrix) |
svg |
6 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-166 | -3.842e+02 | 0.0000 | 253.0 | 31.82% | 1567.1 | 3.35% | motif file (matrix) |
svg |
7 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-163 | -3.761e+02 | 0.0000 | 278.0 | 34.97% | 2097.3 | 4.48% | motif file (matrix) |
svg |
8 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-94 | -2.168e+02 | 0.0000 | 92.0 | 11.57% | 215.7 | 0.46% | motif file (matrix) |
svg |
9 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-71 | -1.648e+02 | 0.0000 | 179.0 | 22.52% | 2078.9 | 4.44% | motif file (matrix) |
svg |
10 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-31 | -7.167e+01 | 0.0000 | 109.0 | 13.71% | 1707.1 | 3.64% | motif file (matrix) |
svg |
11 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-27 | -6.393e+01 | 0.0000 | 71.0 | 8.93% | 815.8 | 1.74% | motif file (matrix) |
svg |
12 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-27 | -6.311e+01 | 0.0000 | 114.0 | 14.34% | 2054.1 | 4.38% | motif file (matrix) |
svg |
13 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-25 | -5.870e+01 | 0.0000 | 98.0 | 12.33% | 1656.0 | 3.53% | motif file (matrix) |
svg |
14 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-18 | -4.302e+01 | 0.0000 | 54.0 | 6.79% | 707.5 | 1.51% | motif file (matrix) |
svg |
15 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-17 | -4.031e+01 | 0.0000 | 44.0 | 5.53% | 500.6 | 1.07% | motif file (matrix) |
svg |
16 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-8 | -2.071e+01 | 0.0000 | 149.0 | 18.74% | 5341.2 | 11.40% | motif file (matrix) |
svg |
17 |
| Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-8 | -2.013e+01 | 0.0000 | 19.0 | 2.39% | 192.1 | 0.41% | motif file (matrix) |
svg |
18 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-8 | -1.923e+01 | 0.0000 | 30.0 | 3.77% | 494.8 | 1.06% | motif file (matrix) |
svg |
19 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-8 | -1.888e+01 | 0.0000 | 71.0 | 8.93% | 1990.7 | 4.25% | motif file (matrix) |
svg |
20 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-7 | -1.827e+01 | 0.0000 | 42.0 | 5.28% | 910.5 | 1.94% | motif file (matrix) |
svg |
21 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.611e+01 | 0.0000 | 98.0 | 12.33% | 3325.8 | 7.10% | motif file (matrix) |
svg |
22 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.601e+01 | 0.0000 | 121.0 | 15.22% | 4399.5 | 9.39% | motif file (matrix) |
svg |
23 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-6 | -1.580e+01 | 0.0000 | 70.0 | 8.81% | 2114.1 | 4.51% | motif file (matrix) |
svg |
24 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.501e+01 | 0.0000 | 245.0 | 30.82% | 10800.9 | 23.06% | motif file (matrix) |
svg |
25 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-5 | -1.227e+01 | 0.0001 | 14.0 | 1.76% | 183.4 | 0.39% | motif file (matrix) |
svg |
26 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-5 | -1.206e+01 | 0.0001 | 15.0 | 1.89% | 213.8 | 0.46% | motif file (matrix) |
svg |
27 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-5 | -1.169e+01 | 0.0001 | 65.0 | 8.18% | 2157.2 | 4.60% | motif file (matrix) |
svg |
28 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-4 | -1.099e+01 | 0.0002 | 50.0 | 6.29% | 1548.1 | 3.30% | motif file (matrix) |
svg |
29 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-4 | -9.887e+00 | 0.0006 | 35.0 | 4.40% | 985.6 | 2.10% | motif file (matrix) |
svg |
30 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.694e+00 | 0.0007 | 25.0 | 3.14% | 605.9 | 1.29% | motif file (matrix) |
svg |
31 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-4 | -9.462e+00 | 0.0009 | 24.0 | 3.02% | 577.6 | 1.23% | motif file (matrix) |
svg |
32 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -8.683e+00 | 0.0019 | 119.0 | 14.97% | 5050.9 | 10.78% | motif file (matrix) |
svg |
33 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-3 | -8.651e+00 | 0.0019 | 230.0 | 28.93% | 10952.0 | 23.38% | motif file (matrix) |
svg |
34 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-3 | -7.776e+00 | 0.0045 | 112.0 | 14.09% | 4811.4 | 10.27% | motif file (matrix) |
svg |
35 |
| FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer | 1e-3 | -7.764e+00 | 0.0045 | 28.0 | 3.52% | 810.0 | 1.73% | motif file (matrix) |
svg |
36 |
| ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.197e+00 | 0.0076 | 99.0 | 12.45% | 4224.4 | 9.02% | motif file (matrix) |
svg |
37 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-3 | -7.029e+00 | 0.0087 | 275.0 | 34.59% | 13777.0 | 29.41% | motif file (matrix) |
svg |
38 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -6.825e+00 | 0.0104 | 67.0 | 8.43% | 2669.8 | 5.70% | motif file (matrix) |
svg |
39 |
| Sp1(Zf)/Promoter/Homer | 1e-2 | -6.111e+00 | 0.0207 | 19.0 | 2.39% | 529.4 | 1.13% | motif file (matrix) |
svg |
40 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-2 | -6.041e+00 | 0.0217 | 26.0 | 3.27% | 825.4 | 1.76% | motif file (matrix) |
svg |
41 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.979e+00 | 0.0225 | 11.0 | 1.38% | 233.2 | 0.50% | motif file (matrix) |
svg |
42 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -5.964e+00 | 0.0225 | 38.0 | 4.78% | 1368.1 | 2.92% | motif file (matrix) |
svg |
43 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.927e+00 | 0.0226 | 16.0 | 2.01% | 419.5 | 0.90% | motif file (matrix) |
svg |
44 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -5.899e+00 | 0.0227 | 42.0 | 5.28% | 1560.4 | 3.33% | motif file (matrix) |
svg |
45 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-2 | -5.897e+00 | 0.0227 | 24.0 | 3.02% | 748.4 | 1.60% | motif file (matrix) |
svg |
46 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.789e+00 | 0.0242 | 51.0 | 6.42% | 2000.8 | 4.27% | motif file (matrix) |
svg |
47 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-2 | -5.275e+00 | 0.0396 | 5.0 | 0.63% | 64.9 | 0.14% | motif file (matrix) |
svg |
48 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.895e+00 | 0.0567 | 17.0 | 2.14% | 510.2 | 1.09% | motif file (matrix) |
svg |
49 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-2 | -4.711e+00 | 0.0669 | 6.0 | 0.75% | 103.1 | 0.22% | motif file (matrix) |
svg |
50 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.628e+00 | 0.0712 | 66.0 | 8.30% | 2890.0 | 6.17% | motif file (matrix) |
svg |