Information for 8-CAGCCCATTA (Motif 5)

G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A
Reverse Opposite:
A G C T T C G A C T G A A C G T A C T G A C T G T C A G T G A C A G C T A C T G
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.843
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif71.9
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets69.6 +/- 23.3bp
Average Position of motif in Background47.2 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0098.1_Zfp410_1/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCCCATTA--
NNNTCCATCCCATAANN
 A C G T A C G T A C G T A C G T A C G T G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CAGCCCATTA--
--GGCCATTAAC
 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

SREBF2/MA0596.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCCATTA
ATCACCCCAT--
 A C G T A C G T G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAGCCCATTA-
-AGCTCATTAT
 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CAGCCCATTA-
---CCAATTAA
 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CAGCCCATTA--
----YCATTAMC
 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CAGCCCATTA-
---GCAATTAG
 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCCATTA-----
NNNACCTCATTATCNTN
 A C G T A C G T G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCATTA
ATCACCCCAT--
 A C G T A C G T G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CAGCCCATTA-
---BCMATTAG
 G T A C C T G A A C T G A G T C A G T C A G T C C G T A A G C T A C G T T C G A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G