Information for 2-CWTTNWHATGCAAATD (Motif 2)

A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T
Reverse Opposite:
G T C A G C T A A G C T G A C T C G A T A T C G A G T C C G T A C G A T C A G T C G T A T A C G C G T A C G T A C G A T C T A G
p-value:1e-90
log p-value:-2.087e+02
Information Content per bp:1.698
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.17%
Number of Background Sequences with motif35.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.7 +/- 22.3bp
Average Position of motif in Background48.9 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD
CTTTGTTATGCAAAT-
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CWTTNWHATGCAAATD
CATTGTTATGCAAAT-
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:CWTTNWHATGCAAATD--
-----ATATGCAAATNNN
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:CWTTNWHATGCAAATD
-----TTATGCAAAT-
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:5
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD---
---TTGTATGCAAATTAGA
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD---
---TTGTATGCAAATTAGA
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.76
Offset:5
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD
-----ATATGCAAAT-
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T
A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD---
---TTGTATGCAAATTAGA
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.74
Offset:6
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD--
------TATGCWAATBAV
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.73
Offset:4
Orientation:forward strand
Alignment:CWTTNWHATGCAAATD
----AATATGCAAATT
 A G T C G C T A A C G T A C G T A G T C G C A T G T C A C G T A A C G T A C T G A T G C C G T A C T G A C T G A C G A T C A G T
A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T