Information for 13-CTGACCTGACTAG (Motif 18)

A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G
p-value:1e-3
log p-value:-8.858e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.8 +/- 21.2bp
Average Position of motif in Background57.4 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGACTAG
-TGACCTYA----
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGACTAG
-TGACCT------
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTGACTAG
NNNNTGACCCGGCGCG
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

ZEB1/MA0103.2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGACCTGACTAG
CCTCACCTG-----
 A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGACTAG
-TGACCTARTT--
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGACTAG
-TGACCTTGAT--
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTGACTAG
NNCNTGACCCCGCTCT
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTGACTAG
NNACTTACCTN-----
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGACTAG-
TTGACCTANTTATN
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGACTAG
GTGACCTT-----
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A A G T C A C G T C G T A A C T G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T