Information for 10-AGGGGATTAG (Motif 6)

C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T G T A C A G T C A G T C G T A C A C G T
p-value:1e-11
log p-value:-2.677e+01
Information Content per bp:1.929
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif19.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.7 +/- 17.5bp
Average Position of motif in Background42.6 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGGGATTAG
AAGAGGATTAG
 A C G T C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:AGGGGATTAG-
-NNGGATTAGN
 C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:AGGGGATTAG-
-GNGGATTAGN
 C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGGGGATTAG-----
AGGGGGATTAGCTGCC
 A C G T C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---AGGGGATTAG---
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:AGGGGATTAG-
--GGGATTANN
 C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AGGGGATTAG
--RGGATTAR
 C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:AGGGGATTAG-
-VRGGATTARN
 C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--AGGGGATTAG-----
NNAAGGGATTAACGANT
 A C G T A C G T C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:AGGGGATTAG-
---GGATTAGC
 C G T A A C T G A C T G C T A G A C T G C G T A A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C