Homer de novo Motif Results (hs_EmbryonicEndoderm_HUES64_normal_SRF_SRX702114_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 873
Total background sequences = 47978
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T G A T A G C A G T C C G T A T A G C G A C T C T G A A C T G C T A G C A G T T C A G A C T G A G T C C T G A T A G C G A C T 1e-447-1.031e+0341.35%1.15%11.7bp (26.8bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.952)
More Information | Similar Motifs Found
motif file (matrix)
2 * A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G 1e-11-2.756e+013.89%0.87%30.2bp (28.1bp)PB0103.1_Zic3_1/Jaspar(0.615)
More Information | Similar Motifs Found
motif file (matrix)
3 * A G T C G C A T A C T G C A T G A T C G C G T A C T A G C T G A C T A G C T A G C G T A A C T G C G A T A C T G G T A C C T G A 1e-11-2.650e+010.69%0.00%27.5bp (7.2bp)PB0146.1_Mafk_2/Jaspar(0.575)
More Information | Similar Motifs Found
motif file (matrix)
4 * C G A T A C T G C T A G G T A C C G T A A C T G A G T C C G T A A C T G C T G A A C T G A T C G C G T A 1e-10-2.408e+010.69%0.01%24.9bp (24.8bp)Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.564)
More Information | Similar Motifs Found
motif file (matrix)
5 * A T G C G T C A C T A G C G T A A C T G A C T G A G T C C T A G A C T G C A G T A G T C C G A T A G T C 1e-9-2.236e+010.92%0.03%19.3bp (33.2bp)POL006.1_BREu/Jaspar(0.584)
More Information | Similar Motifs Found
motif file (matrix)
6 * A C T G A C T G A C T G A C G T A C T G C T A G C A G T A C T G C T G A A C G T A C T G A T C G A G T C A C T G A G T C A G T C 1e-9-2.215e+010.80%0.02%25.4bp (27.1bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.624)
More Information | Similar Motifs Found
motif file (matrix)
7 * G T A C A C T G A C T G C A T G G T C A G T C A A T G C C G A T A C T G A G T C C G T A A C T G A T C G 1e-9-2.144e+011.26%0.09%26.7bp (25.3bp)Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.671)
More Information | Similar Motifs Found
motif file (matrix)
8 * C G T A A C T G G T C A A C T G A T G C C T G A A C T G A T G C A G T C G T A C A G T C A G T C A C T G A G T C A T G C A T C G 1e-9-2.139e+010.57%0.00%24.4bp (0.0bp)PB0010.1_Egr1_1/Jaspar(0.547)
More Information | Similar Motifs Found
motif file (matrix)
9 * A G T C C A T G A T C G C T G A T C G A A C T G A T C G T C A G T A C G A T C G G A T C A C T G A T G C C A T G A T C G C A T G 1e-9-2.104e+010.69%0.01%20.8bp (16.9bp)PB0076.1_Sp4_1/Jaspar(0.740)
More Information | Similar Motifs Found
motif file (matrix)
10 * C G T A A G T C A G C T T G A C C A T G A C G T A C G T A C G T A C G T C G T A 1e-8-2.032e+011.03%0.05%30.9bp (32.2bp)GRHL1/MA0647.1/Jaspar(0.685)
More Information | Similar Motifs Found
motif file (matrix)
11 * A G T C A G T C A G T C A G T C C G A T A T G C A C T G T G A C A C T G A C T G A G T C A G T C A C G T 1e-8-1.937e+010.57%0.01%22.3bp (16.7bp)BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.607)
More Information | Similar Motifs Found
motif file (matrix)
12 * C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A 1e-8-1.910e+011.37%0.14%31.2bp (26.2bp)RORA/MA0071.1/Jaspar(0.697)
More Information | Similar Motifs Found
motif file (matrix)
13 * A G T C C G T A G T C A G T C A A G T C A T G C A G T C A C T G A C T G C T A G 1e-8-1.901e+011.26%0.11%19.4bp (26.6bp)p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(0.650)
More Information | Similar Motifs Found
motif file (matrix)