Information for 7-AACAAGATCA (Motif 12)

C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A
Reverse Opposite:
A C G T A C T G C T G A C A G T A G T C A G C T C G A T C T A G A G C T A C G T
p-value:1e-8
log p-value:-1.910e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif65.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets50.5 +/- 31.2bp
Average Position of motif in Background54.8 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AACAAGATCA
ATCAAGGTCA
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AACAAGATCA-
---AAGGTCAC
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AACAAGATCA
AAYTAGGTCA
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AACAAGATCA--
--CAAGGHCANV
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AACAAGATCA-
-TCAAGGTCAT
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AACAAGATCA--
-TCAAGGTCATA
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Mecom/MA0029.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AACAAGATCA--
AAGATAAGATAACA
 A C G T A C G T C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AACAAGATCA-
-TCAAGGTCAN
 C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AACAAGATCA-----
TATTCAAGGTCATGCGA
 A C G T A C G T C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AACAAGATCA---
CAAACAACAACACCT
 A C G T A C G T C G T A C T G A A G T C C G T A C T G A C T A G G T C A G A C T G T A C C G T A A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T