Information for 5-CTCCGGGAGG (Motif 2)

A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G
Reverse Opposite:
A T G C G T A C C G A T T A G C A G T C T G A C A C T G A C T G C G T A C T A G
p-value:1e-11
log p-value:-2.756e+01
Information Content per bp:1.845
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif414.7
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets47.2 +/- 30.2bp
Average Position of motif in Background49.0 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0103.1_Zic3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCCGGGAGG--
CCCCCCCGGGGGGGT
 A C G T A C G T A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCCGGGAGG
GCTCCG-----
 A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCCGGGAGG
TTCCNGGAAG
 A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCCGGGAGG-
CACCCCCGGGGGGG
 A C G T A C G T A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0102.1_Zic2_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCCGGGAGG--
CCCCCCCGGGGGGGT
 A C G T A C G T A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTCCGGGAGG-----
ANTNCCGGGGGGAANTT
 A C G T A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T A C G T A C G T A C G T A C G T
C T G A A G T C G A C T G A C T T A G C A T G C T A C G T A C G A C T G C T A G C T A G C T A G C G T A G T C A G A C T G A C T G A C T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTCCGGGAGG----
----GGGAGGACNG
 A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGGGAGG--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCCGGGAGG
ACATCCTGNT--
 A C G T A C G T A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

Gabpa/MA0062.2/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCCGGGAGG---
--CCGGAAGTGGC
 A G T C A C G T A G T C T G A C A C T G A C T G A T C G C G T A A C T G A T C G A C G T A C G T A C G T
A C G T A C G T T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C