Homer de novo Motif Results (hs_lymphoma_Raji_cancer_CIITA_SRX865410_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 733
Total background sequences = 47741
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T A G C G C T A A C G T A G C T A G T C A G C T T A C G A G T C G T A C G A C T C T G A C T A G G A T C C T G A C T G A G T A C 1e-302-6.965e+0234.38%1.00%21.8bp (30.1bp)Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(0.945)
More Information | Similar Motifs Found		motif file (matrix)
2 A G T C A G T C G A C T C T A G C T A G G C A T C T A G C G T A A G T C G C T A A T C G T C G A A C G T A C T G C G T A A G T C 1e-86-1.995e+028.59%0.15%22.6bp (26.9bp)NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer(0.652)
More Information | Similar Motifs Found		motif file (matrix)
3 A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G 1e-57-1.332e+0212.69%1.35%24.1bp (32.6bp)NFY(CCAAT)/Promoter/Homer(0.940)
More Information | Similar Motifs Found		motif file (matrix)
4 A G T C G T A C G A T C A G C T G C A T G A T C A G T C A G C T A C G T A C T G A C G T A C G T A C T G A G T C A G C T C G T A 1e-14-3.299e+010.95%0.01%24.8bp (0.0bp)PB0054.1_Rfx3_1/Jaspar(0.657)
More Information | Similar Motifs Found		motif file (matrix)
5 A C G T A C T G G T A C A C G T A C G T A G T C A G T C A G C T A T G C A G C T A C G T A G T C A G T C 1e-14-3.243e+011.64%0.05%20.3bp (28.3bp)SPIB/MA0081.1/Jaspar(0.707)
More Information | Similar Motifs Found		motif file (matrix)
6 A G T C A C G T A T C G A C G T A G T C A G T C C G T A C T A G A C T G A C T G A C G T A C T G A G T C A C G T A C T G C G T A 1e-13-3.169e+010.82%0.00%23.8bp (0.0bp)REST/MA0138.2/Jaspar(0.914)
More Information | Similar Motifs Found		motif file (matrix)
7 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C 1e-12-2.983e+011.09%0.01%29.4bp (18.8bp)Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer(0.543)
More Information | Similar Motifs Found		motif file (matrix)
8 C G A T A T C G G T A C A G C T A T G C A G T C C G T A A C T G C T A G A G T C C G T A C T A G C G T A 1e-12-2.904e+011.23%0.02%31.9bp (20.9bp)Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer(0.653)
More Information | Similar Motifs Found		motif file (matrix)
9 * C T G A A C T G A G T C A C G T A C G T A G T C C T G A A C T G A G T C A C G T A T C G A G C T A G T C 1e-11-2.755e+011.09%0.02%30.2bp (31.7bp)Myog/MA0500.1/Jaspar(0.674)
More Information | Similar Motifs Found		motif file (matrix)
10 * A T G C C G T A A T C G C G T A A C T G C G A T A C G T C G T A A T C G A C G T A C T G A T G C G T A C A C G T A C G T A G T C 1e-11-2.755e+011.09%0.02%33.9bp (25.8bp)ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer(0.636)
More Information | Similar Motifs Found		motif file (matrix)
11 * T C G A T C A G C G A T C A T G C A G T T C G A C A G T A C T G C G T A C G T A G A C T C T G A C G A T C G T A T C G A C G T A 1e-11-2.691e+011.23%0.03%20.1bp (21.6bp)POL012.1_TATA-Box/Jaspar(0.626)
More Information | Similar Motifs Found		motif file (matrix)
12 * T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T 1e-11-2.661e+010.95%0.01%25.5bp (19.3bp)PB0207.1_Zic3_2/Jaspar(0.709)
More Information | Similar Motifs Found		motif file (matrix)
13 * T C A G T C G A A C G T A T C G C T G A A G T C T C A G A C G T G T A C C G T A 1e-11-2.647e+014.09%0.84%20.1bp (27.3bp)Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer(0.955)
More Information | Similar Motifs Found		motif file (matrix)
14 * C T G A A G T C G T A C A C T G C G T A A C T G C G T A A C G T A G T C A C G T A C T G A G T C A T C G 1e-11-2.571e+010.68%0.00%26.6bp (0.0bp)PB0139.1_Irf5_2/Jaspar(0.636)
More Information | Similar Motifs Found		motif file (matrix)
15 * C G T A C G T A A C G T C T A G A C T G A C T G A C G T C G T A C G T A C G T A C T A G C G A T C T A G 1e-11-2.571e+010.68%0.00%21.6bp (0.0bp)PB0132.1_Hbp1_2/Jaspar(0.632)
More Information | Similar Motifs Found		motif file (matrix)
16 * A T C G C G T A C T A G C T A G A C T G A T C G C G T A A C G T A C T G A G T C C G T A A C G T A G T C 1e-10-2.512e+010.82%0.01%21.1bp (20.9bp)PB0098.1_Zfp410_1/Jaspar(0.624)
More Information | Similar Motifs Found		motif file (matrix)
17 * A T C G A T G C G T A C A G T C C G T A A G C T C T G A A C T G A G T C C G T A C G T A T G A C C G T A C T A G A G T C C G T A 1e-10-2.512e+010.82%0.01%26.1bp (9.1bp)Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(0.632)
More Information | Similar Motifs Found		motif file (matrix)
18 * A T C G G T C A C G T A C T G A A C G T A C G T A G C T C G A T A C G T C G A T A G C T A G T C A C G T C G A T A G T C A C G T 1e-10-2.428e+010.95%0.01%26.5bp (14.6bp)PB0141.1_Isgf3g_2/Jaspar(0.544)
More Information | Similar Motifs Found		motif file (matrix)
19 * C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A 1e-10-2.410e+013.14%0.54%26.4bp (27.0bp)GLI2/MA0734.1/Jaspar(0.642)
More Information | Similar Motifs Found		motif file (matrix)
20 * A C T G G T A C A G T C C G T A G T C A C G A T A T G C G T A C G C A T C A T G C T A G C T A G A T C G G T C A C T A G A G T C 1e-9-2.255e+010.95%0.02%19.3bp (20.7bp)POL004.1_CCAAT-box/Jaspar(0.543)
More Information | Similar Motifs Found		motif file (matrix)
21 * A C T G C T A G C T G A C G T A C T A G C A T G C T A G G A T C C G A T A T C G C G T A C G A T T A G C A C G T T A G C C G T A 1e-9-2.156e+012.59%0.41%23.2bp (27.3bp)ETV6/MA0645.1/Jaspar(0.580)
More Information | Similar Motifs Found		motif file (matrix)
22 * G A C T G C A T C G T A T C G A T C G A C T G A C G A T C G A T C G T A T C G A C T G A G A C T G C T A A G T C A G T C G A T C 1e-8-2.063e+012.32%0.34%27.1bp (24.1bp)Arid3a/MA0151.1/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
23 * C G T A C A T G A C G T A C T G C T G A T C A G A C G T A G T C G T C A G T A C 1e-8-2.038e+011.64%0.14%18.5bp (27.8bp)FOS::JUN/MA0099.2/Jaspar(0.823)
More Information | Similar Motifs Found		motif file (matrix)
24 * A T C G G C T A C G T A A C T G A C T G A C T G A G T C C A G T A C T G A C T G G T C A A C G T A C G T A G T C T C A G A T C G 1e-8-2.024e+010.68%0.01%20.1bp (16.6bp)E2F6/MA0471.1/Jaspar(0.638)
More Information | Similar Motifs Found		motif file (matrix)
25 * A C G T A G C T A G T C A G T C A C G T A C T G C G A T G T A C C A G T A G C T 1e-8-2.018e+012.73%0.50%26.4bp (28.8bp)EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer(0.812)
More Information | Similar Motifs Found		motif file (matrix)
26 * A C T G C G T A C G T A C G T A A G C T C G T A A C T G A G T C C G T A C G A T A G T C A G T C C G T A 1e-8-1.992e+010.55%0.00%24.6bp (0.0bp)ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer(0.602)
More Information | Similar Motifs Found		motif file (matrix)
27 * A G T C A G T C A G T C G T C A A C T G A C T G C T A G A G T C A C T G G T C A C G A T G T A C C G A T A G T C A G T C A G T C 1e-8-1.992e+010.55%0.00%14.0bp (9.2bp)TFAP2A(var.2)/MA0810.1/Jaspar(0.516)
More Information | Similar Motifs Found		motif file (matrix)
28 * G T A C G C A T C G A T C A G T C A T G T G C A A G T C C G A T A T C G A C G T C A T G C A T G T A C G 1e-8-1.972e+011.36%0.09%17.3bp (27.9bp)PB0166.1_Sox12_2/Jaspar(0.610)
More Information | Similar Motifs Found		motif file (matrix)
29 * C A T G C G A T A G T C G C A T A G C T A T C G T C G A C A G T A T C G A C G T C T A G A T C G C T G A 1e-8-1.945e+012.05%0.27%29.5bp (26.0bp)ZNF354C/MA0130.1/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
30 * A C G T A C T G A T C G A G T C C T G A A C T G A C G T A T C G C G T A A C T G C T A G A C G T A C T G 1e-8-1.930e+010.82%0.02%31.2bp (29.6bp)PB0195.1_Zbtb3_2/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)
31 * G T A C C G T A T A G C G T A C G A C T T A G C A G T C C G T A A C T G G T A C G T C A C A G T A C T G C G A T A C T G G C T A 1e-8-1.898e+011.09%0.05%23.8bp (25.1bp)USF2/MA0526.1/Jaspar(0.572)
More Information | Similar Motifs Found		motif file (matrix)
32 * T C G A G T A C G C A T A C T G C G A T G A C T T C G A A T G C A G T C C G T A A C G T A G T C A G C T 1e-7-1.838e+011.91%0.25%25.0bp (26.7bp)Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.639)
More Information | Similar Motifs Found		motif file (matrix)
33 * A C G T T G C A C T A G G T A C C G A T T C A G A C G T C A G T A G C T C G A T A C T G C G T A A C G T A C G T A G C T A C G T 1e-7-1.799e+010.82%0.02%23.1bp (25.8bp)ONECUT3/MA0757.1/Jaspar(0.660)
More Information | Similar Motifs Found		motif file (matrix)
34 * C T G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A C T G A T C G A T C G A T G C A 1e-7-1.656e+014.91%1.76%28.1bp (22.7bp)PB0182.1_Srf_2/Jaspar(0.747)
More Information | Similar Motifs Found		motif file (matrix)
35 * A G T C A G T C A C T G A C T G A T C G C G A T A C G T A C G T A C G T A G T C 1e-7-1.617e+010.95%0.05%23.7bp (32.2bp)REL/MA0101.1/Jaspar(0.716)
More Information | Similar Motifs Found		motif file (matrix)
36 * A T C G C G T A A T C G C G T A C G T A A C G T A C T G A T G C G T C A A C G T A C G T A T G C C G A T 1e-6-1.594e+011.23%0.11%14.9bp (26.2bp)Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer(0.685)
More Information | Similar Motifs Found		motif file (matrix)
37 * A C T G A C T G T C G A C G T A G T A C C T A G C G A T C G T A G T A C A C G T A C T G A C G T A C T G 1e-6-1.435e+010.41%0.00%15.0bp (2.9bp)HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer(0.620)
More Information | Similar Motifs Found		motif file (matrix)
38 * A C G T A C T G A C G T A C T G A C G T C G T A A C G T C G T A A C T G A C T G 1e-5-1.228e+010.41%0.00%10.4bp (6.0bp)FOXH1/MA0479.1/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
39 * A G T C A G T C A C G T A G T C C G T A A G T C G T A C C G T A A C T G A C T G A C T G A G T C A C G T 1e-3-9.064e+000.27%0.00%29.2bp (0.0bp)ZEB1/MA0103.2/Jaspar(0.648)
More Information | Similar Motifs Found		motif file (matrix)
40 * A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T 1e-3-7.688e+000.27%0.01%11.1bp (27.2bp)HMBOX1/MA0895.1/Jaspar(0.832)
More Information | Similar Motifs Found		motif file (matrix)