Information for 8-AGGGTGMTCA (Motif 19)

C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A C A G T A G T C C G T A A T G C G T A C G T A C A C G T
p-value:1e-10
log p-value:-2.410e+01
Information Content per bp:1.851
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.14%
Number of Background Sequences with motif257.8
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets47.3 +/- 26.4bp
Average Position of motif in Background49.3 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGGTGMTCA-
CAGTGTGGTCGC
 A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGGTGMTCA----
NTNTATGTGCACATNNN
 A C G T A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGGTGMTCA
CGTGGGTGGTCC
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGGTGMTCA----
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PB0026.1_Gm397_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGGTGMTCA-----
CAGATGTGCACATACGT
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

POL002.1_INR/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGGTGMTCA
NNNANTGA---
 A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGGGTGMTCA----
NNANTGGTGGTCTTNNN
 A C G T A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGGTGMTCA
AAGGTGTKAA
 C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGGTGMTCA-
-AGGTGTTAAT
 C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGGGTGMTCA--
TATGTAAACANG
 C G T A A C T G A C T G T A C G A C G T A C T G G T C A C G A T A T G C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G