Information for 15-TTAACTAGGT (Motif 40)

A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T C G T A C G T A
p-value:1e-3
log p-value:-7.688e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.7 +/- 11.1bp
Average Position of motif in Background61.1 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TTAACTAGGT
GTTAACTAGN-
 A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TTAACTAGGT---
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----TTAACTAGGT--
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTAACTAGGT
TTAATTAG--
 A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------TTAACTAGGT-
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TTAACTAGGT---
TATAAGTAGGTCAA
 A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTAACTAGGT--
--AAYTAGGTCA
 A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

mix-a/MA0621.1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTAACTAGGT
AATTAATTAGT-
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T
C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTAACTAGGT--
NNNGTAACTANGNNA
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PH0147.1_Pou3f2/Jaspar

Match Rank:10
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TTAACTAGGT--
GATAATTAATTAGTTTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G