Homer de novo Motif Results (hs_Squamouscellcarcinom_SCC9_undef_CHD4_SRX2741419_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 734
Total background sequences = 7715
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T C A G C A G T A C T G C G T A A T C G A G C T G T A C C G T A A C T G A T G C 1e-48-1.107e+0210.90%1.23%25.8bp (30.4bp)JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer(0.978)
More Information | Similar Motifs Found
motif file (matrix)
2 A G T C C G A T A T G C G T A C T A G C G T C A T C G A C A T G A C T G A C T G G T C A T A G C G A C T 1e-21-4.837e+011.63%0.02%29.5bp (8.7bp)EBF1/MA0154.3/Jaspar(0.865)
More Information | Similar Motifs Found
motif file (matrix)
3 A C G T A C G T A C G T A C T G G C A T A C T G G A T C C G T A C G T A A G C T 1e-18-4.368e+014.36%0.52%30.0bp (31.8bp)CEBPA/MA0102.3/Jaspar(0.925)
More Information | Similar Motifs Found
motif file (matrix)
4 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A 1e-14-3.409e+011.23%0.02%29.6bp (32.2bp)Hic1/MA0739.1/Jaspar(0.722)
More Information | Similar Motifs Found
motif file (matrix)
5 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C 1e-13-3.159e+011.91%0.10%23.2bp (26.5bp)NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer(0.540)
More Information | Similar Motifs Found
motif file (matrix)
6 C T A G A C T G A T C G A C T G A C T G C G T A A C T G A C T G T A C G A T C G C A T G A C T G C T A G 1e-13-3.045e+011.77%0.08%19.8bp (27.0bp)Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer(0.835)
More Information | Similar Motifs Found
motif file (matrix)
7 A C G T C G T A A G T C C G A T A C G T C T G A A G C T C A T G G T C A A G T C 1e-12-2.953e+011.09%0.02%29.7bp (0.0bp)HLTF/MA0109.1/Jaspar(0.641)
More Information | Similar Motifs Found
motif file (matrix)
8 A C G T G T A C C G T A A C T G A C T G A C T G C G T A G T C A C G T A C A G T A T G C A G T C A G C T 1e-12-2.953e+011.09%0.02%20.5bp (0.0bp)NFAT5/MA0606.1/Jaspar(0.705)
More Information | Similar Motifs Found
motif file (matrix)
9 C G A T A C T G C G T A G T A C C G T A A T G C C G T A G T A C C G T A A C T G C T G A C A G T A C G T 1e-12-2.953e+011.09%0.02%16.7bp (0.0bp)FOS::JUN/MA0099.2/Jaspar(0.632)
More Information | Similar Motifs Found
motif file (matrix)
10 T A G C C A G T A C G T A G T C A C G T A T G C A C G T A T C G A C T G C G T A T A C G G T C A C G T A 1e-12-2.953e+011.09%0.01%18.6bp (0.0bp)NFATC2/MA0152.1/Jaspar(0.679)
More Information | Similar Motifs Found
motif file (matrix)
11 C G T A C G A T A C G T A G C T A C G T C G A T A C G T C G A T A C G T C G T A C G A T A C G T A C G T G C A T A C G T A C G T 1e-12-2.953e+011.09%0.02%22.5bp (0.0bp)PB0093.1_Zfp105_1/Jaspar(0.686)
More Information | Similar Motifs Found
motif file (matrix)
12 C T A G C G A T A G C T A C G T C T G A A T G C A C G T A C T G C G T A A T C G C G T A C T A G C A T G C G T A C T G A C T A G 1e-12-2.953e+011.09%0.02%29.6bp (23.6bp)SPIB/MA0081.1/Jaspar(0.683)
More Information | Similar Motifs Found
motif file (matrix)
13 A T G C C T G A G A T C G C A T C A G T A G T C G A T C C G A T T A C G A G C T 1e-12-2.881e+018.45%2.94%30.3bp (27.7bp)ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer(0.967)
More Information | Similar Motifs Found
motif file (matrix)
14 G A C T A C G T A C T G G T A C G T C A A C G T A G T C C G T A A G C T C G T A C A G T A C G T T C A G 1e-12-2.794e+011.36%0.05%27.2bp (12.5bp)Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer(0.786)
More Information | Similar Motifs Found
motif file (matrix)
15 G T A C A T C G C G T A A G T C A C G T A G T C A T G C A G T C G A T C A C T G A T C G A C T G T G C A 1e-12-2.794e+011.23%0.04%18.9bp (16.3bp)GLIS2/MA0736.1/Jaspar(0.622)
More Information | Similar Motifs Found
motif file (matrix)
16 T C G A A T C G A T C G A G T C A G T C C G T A C T A G G T A C G C T A C A T G A C T G C T A G A T G C G T C A A C T G T G C A 1e-12-2.794e+011.23%0.03%29.5bp (10.4bp)ESR2/MA0258.2/Jaspar(0.632)
More Information | Similar Motifs Found
motif file (matrix)
17 * C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G 1e-11-2.730e+011.63%0.09%25.6bp (26.7bp)Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.609)
More Information | Similar Motifs Found
motif file (matrix)
18 * T C A G A G C T A C T G T A C G C A G T C G A T A C G T T C G A A G T C C A T G 1e-11-2.643e+013.68%0.69%25.6bp (27.2bp)RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(0.808)
More Information | Similar Motifs Found
motif file (matrix)
19 * A C T G A T G C A C T G A G T C G T C A C T A G T A G C A C G T A C T G A C G T 1e-11-2.554e+011.63%0.09%26.5bp (29.5bp)E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer(0.755)
More Information | Similar Motifs Found
motif file (matrix)
20 * A G T C C G A T A G T C C G T A A G T C C G A T A T C G C G T A T G A C G C A T T G C A C G T A T A G C 1e-10-2.515e+011.36%0.06%25.2bp (7.9bp)PB0195.1_Zbtb3_2/Jaspar(0.605)
More Information | Similar Motifs Found
motif file (matrix)
21 * A G T C A G T C A C G T A C G T G T A C A G T C A T G C C G T A A T C G T A G C A G T C G C A T G A T C G A C T G T A C A G T C 1e-10-2.515e+011.36%0.06%31.8bp (17.6bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.641)
More Information | Similar Motifs Found
motif file (matrix)
22 * C G T A A C G T A G T C A G T C C G T A C A G T A G T C A C G T C G T A A C T G 1e-10-2.509e+010.95%0.01%26.1bp (0.0bp)YY1/MA0095.2/Jaspar(0.662)
More Information | Similar Motifs Found
motif file (matrix)
23 * A T C G A C G T C G A T A C T G C T G A A C G T A C G T A C G T C G T A C G T A T C G A C G T A C T A G 1e-10-2.509e+010.95%0.00%26.5bp (0.0bp)LIN54/MA0619.1/Jaspar(0.701)
More Information | Similar Motifs Found
motif file (matrix)
24 * A C G T A T C G A G T C A G T C C G A T A T G C A G T C A C G T A G T C G T A C G T C A A C T G C T A G T C A G C T G A A C T G 1e-10-2.509e+010.95%0.01%19.2bp (0.0bp)Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer(0.565)
More Information | Similar Motifs Found
motif file (matrix)
25 * A C T G A G T C C T G A A T C G C G T A A C T G A T G C C G T A A C T G A G T C A G T C A G T C C G T A A T G C T C A G A C T G 1e-10-2.407e+011.09%0.03%22.5bp (3.4bp)PB0189.1_Tcfap2a_2/Jaspar(0.563)
More Information | Similar Motifs Found
motif file (matrix)
26 * C A G T A T C G A G T C A G C T A G C T A T G C G A T C C A T G A C T G T G C A 1e-10-2.362e+018.99%3.69%28.2bp (27.5bp)Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer(0.797)
More Information | Similar Motifs Found
motif file (matrix)
27 * A C G T C G T A A G C T A C G T A G T C A C G T G T A C C G T A A C T G A G C T 1e-10-2.345e+011.91%0.18%27.9bp (21.3bp)PB0138.1_Irf4_2/Jaspar(0.710)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C T G A G T C A G T C A G T C A G T C A G T C A C G T G A C T A C T G A C G T C T A G A C T G G A T C 1e-9-2.300e+011.36%0.07%29.1bp (26.5bp)BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.834)
More Information | Similar Motifs Found
motif file (matrix)
29 * C T G A A C T G G T C A C G T A A C T G T A C G T G C A A G T C T A G C C G A T 1e-9-2.270e+011.63%0.13%21.2bp (30.0bp)POL008.1_DCE_S_I/Jaspar(0.621)
More Information | Similar Motifs Found
motif file (matrix)
30 * A C T G C T A G G C T A C T A G T C A G A T G C C G A T A C T G G T A C A G T C A G T C C G T A C T A G 1e-9-2.256e+012.45%0.34%30.7bp (25.4bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.704)
More Information | Similar Motifs Found
motif file (matrix)
31 * A G T C A G C T A T G C C G T A A T C G A T G C C G T A G C A T C G A T T A C G 1e-9-2.196e+012.45%0.36%23.3bp (27.9bp)Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer(0.702)
More Information | Similar Motifs Found
motif file (matrix)
32 * A G T C A C G T A C T G T C G A A C G T A T C G C G A T A G T C C A T G A G T C 1e-9-2.187e+011.23%0.06%29.3bp (6.0bp)PH0037.1_Hdx/Jaspar(0.629)
More Information | Similar Motifs Found
motif file (matrix)
33 * A T G C G T C A A T G C C G T A C T A G A C T G A T G C G A C T A T G C G C T A C A T G C G T A C T A G 1e-9-2.143e+014.36%1.17%25.7bp (27.5bp)ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer(0.640)
More Information | Similar Motifs Found
motif file (matrix)
34 * C A G T A C T G A C G T A G T C C G A T A T C G A C T G A T C G A G T C G T C A 1e-9-2.085e+012.45%0.39%27.5bp (24.1bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.836)
More Information | Similar Motifs Found
motif file (matrix)
35 * A G T C T C G A A T C G A C T G A G T C G T C A A T C G C G T A A C T G A C T G A C T G G A T C C A T G A C T G C T G A A C T G 1e-9-2.078e+010.82%0.01%20.8bp (0.0bp)Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer(0.705)
More Information | Similar Motifs Found
motif file (matrix)
36 * A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C 1e-8-2.032e+010.95%0.03%23.9bp (19.4bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.624)
More Information | Similar Motifs Found
motif file (matrix)
37 * C G T A A C T G A G C T G T C A G T A C C G T A A C T G A C G T A C T G C T A G 1e-8-1.869e+011.09%0.05%29.2bp (36.5bp)NKX2-3/MA0672.1/Jaspar(0.787)
More Information | Similar Motifs Found
motif file (matrix)
38 * A T G C G T C A C T A G A C T G T A G C A G T C C G A T A C T G A T C G G T A C C G T A A T C G G T A C C G T A A T G C G T A C 1e-7-1.839e+011.23%0.09%29.2bp (21.6bp)Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer(0.658)
More Information | Similar Motifs Found
motif file (matrix)
39 * G A C T A C G T G T C A A C G T A G T C A T C G A G T C A C T G C G T A A C T G 1e-7-1.757e+010.95%0.05%23.4bp (11.1bp)GFX(?)/Promoter/Homer(0.840)
More Information | Similar Motifs Found
motif file (matrix)
40 * G T C A A C T G C G T A C T A G C G T A A T C G A G T C A C T G A G T C A G T C 1e-7-1.757e+010.95%0.05%25.6bp (23.5bp)POL006.1_BREu/Jaspar(0.667)
More Information | Similar Motifs Found
motif file (matrix)
41 * A C T G G T A C C T G A C G A T T A C G A G T C A G T C A C G T A T G C C G T A C T A G A C T G C G T A 1e-7-1.671e+010.82%0.03%17.0bp (19.4bp)TFAP2C(var.2)/MA0814.1/Jaspar(0.672)
More Information | Similar Motifs Found
motif file (matrix)
42 * A G T C A C T G A C T G C T G A A T G C A G T C C T A G C T A G A C T G T G A C A G T C C T G A A C T G A C T G A C T G A G T C 1e-7-1.663e+010.68%0.01%25.9bp (0.0bp)Sp1(Zf)/Promoter/Homer(0.588)
More Information | Similar Motifs Found
motif file (matrix)
43 * A C T G A T G C A G T C A C G T A G T C A G T C A C T G G T A C A C T G C G T A 1e-5-1.325e+010.68%0.03%17.7bp (19.3bp)PB0138.1_Irf4_2/Jaspar(0.651)
More Information | Similar Motifs Found
motif file (matrix)
44 * G T C A T A G C G A T C G A C T A G T C G A C T A G T C G T A C C G T A A T C G 1e-5-1.266e+010.54%0.01%16.8bp (0.0bp)Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.686)
More Information | Similar Motifs Found
motif file (matrix)
45 * A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A 1e-5-1.266e+010.54%0.01%20.4bp (0.0bp)PB0208.1_Zscan4_2/Jaspar(0.636)
More Information | Similar Motifs Found
motif file (matrix)
46 * C G T A C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C T G C G T A A G T C 1e-4-9.967e+000.54%0.03%20.9bp (7.9bp)PB0041.1_Mafb_1/Jaspar(0.623)
More Information | Similar Motifs Found
motif file (matrix)