Information for 11-AGCAGTGAGCCAG (Motif 17)

C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
Reverse Opposite:
G A T C G A C T A C T G C T A G G T A C A G C T A T G C G T C A A G T C A C G T A T C G A G T C G C A T
p-value:1e-11
log p-value:-2.730e+01
Information Content per bp:1.777
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets51.1 +/- 25.6bp
Average Position of motif in Background53.4 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGTGAGCCAG
TGGCAGNCTGCCAG
 A C G T C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAGTGAGCCAG
NNNANTGCAGTGCNNTT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTGAGCCAG
DCHCAGCAGGRGGCC--
 A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGCAGTGAGCCAG
CACAGCAGGGGG----
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAGTGAGCCAG---
-SCAGYCADGCATGAC
 C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGTGAGCCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGCAGTGAGCCAG
AGGTGNCAGACAG
 C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCAGTGAGCCAG
TGGCACCATGCCAA
 A C G T C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCAGTGAGCCAG
-GCAGTGATTT--
 C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCAGTGAGCCAG
AGGTGTGA-----
 C G T A A C T G A T G C C G T A C T A G C A G T A T C G C T G A A C T G A G T C T A G C C G T A C A T G
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T