Homer de novo Motif Results (hs_humanbetacelllineEnd_humanbetacelllineEnd_undef_PAX6_SRX2203277_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 821
Total background sequences = 45705
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A G C T C A G T G A C T T G C A G A T C C T A G T A G C G C T A A G C T A T C G C T G A A G T C G A C T C A T G T G A C G T C A 1e-152-3.514e+0224.85%2.02%22.0bp (32.0bp)PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer(0.916)
More Information | Similar Motifs Found
motif file (matrix)
2 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C 1e-44-1.031e+0222.05%6.73%25.1bp (35.2bp)Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer(0.934)
More Information | Similar Motifs Found
motif file (matrix)
3 A G C T A G C T C T A G G C A T A C G T A C G T T C G A G A T C G C T A G A T C 1e-29-6.907e+0118.27%6.42%25.4bp (34.2bp)Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer(0.896)
More Information | Similar Motifs Found
motif file (matrix)
4 C G A T C A G T C T A G T C G A G T A C A G T C C G A T A C G T A C G T T A C G C T A G C G T A A T G C 1e-20-4.663e+011.34%0.01%29.2bp (12.2bp)HNF4G/MA0484.1/Jaspar(0.813)
More Information | Similar Motifs Found
motif file (matrix)
5 G C A T C T G A C T A G G A T C T A G C C G T A C A T G T G A C G C A T T A C G 1e-20-4.654e+0129.35%16.27%26.8bp (34.5bp)Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer(0.854)
More Information | Similar Motifs Found
motif file (matrix)
6 A G C T C T A G T C A G A G T C A C G T A C T G C G A T C A T G G T C A A G T C G T A C G T C A A T C G T C A G C G A T A C T G 1e-16-3.756e+011.22%0.01%21.1bp (34.2bp)Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer(0.591)
More Information | Similar Motifs Found
motif file (matrix)
7 A C G T A C T G C T A G C G A T A G T C C G T A C G T A C G A T A C G T C G T A C A G T A C G T A C G T 1e-15-3.672e+010.85%0.00%28.6bp (0.0bp)PH0132.1_Pax6/Jaspar(0.687)
More Information | Similar Motifs Found
motif file (matrix)
8 G T C A A C G T C T A G C A T G C T G A T A C G A C G T A C T G A C T G T G C A 1e-14-3.449e+012.56%0.23%30.2bp (36.1bp)Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.725)
More Information | Similar Motifs Found
motif file (matrix)
9 A T C G C G A T A C T G A G C T C G T A C T G A A C G T A G T C A C T G C T A G 1e-13-3.164e+011.10%0.02%25.3bp (16.7bp)BSX/MA0876.1/Jaspar(0.714)
More Information | Similar Motifs Found
motif file (matrix)
10 G T A C C G T A T A C G G T C A A G T C G T A C A T G C G C A T A C G T A C T G A T C G C T G A C G T A C G T A C G T A C T A G 1e-13-3.075e+010.73%0.00%14.6bp (16.1bp)NFATC2/MA0152.1/Jaspar(0.654)
More Information | Similar Motifs Found
motif file (matrix)
11 A C G T C T A G C G T A C G A T A G C T A C G T G T A C A G T C C G T A A G T C 1e-12-2.778e+012.68%0.36%27.1bp (31.9bp)PH0037.1_Hdx/Jaspar(0.821)
More Information | Similar Motifs Found
motif file (matrix)
12 * A G C T A G C T A C G T A G T C G T C A C G A T A C T G C T A G A C G T C G A T G C T A T A G C A G C T A C T G C T A G A C G T 1e-11-2.660e+010.73%0.01%23.7bp (22.3bp)PB0159.1_Rfx4_2/Jaspar(0.604)
More Information | Similar Motifs Found
motif file (matrix)
13 * A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C 1e-11-2.659e+015.85%1.80%25.9bp (33.4bp)PB0056.1_Rfxdc2_1/Jaspar(0.903)
More Information | Similar Motifs Found
motif file (matrix)
14 * C T A G A C T G T G C A C T G A C G A T C G T A A C T G C A G T A C T G C G A T A C T G T C G A G T A C C T A G T C A G A C T G 1e-11-2.557e+012.07%0.22%25.9bp (23.3bp)TBX21/MA0690.1/Jaspar(0.536)
More Information | Similar Motifs Found
motif file (matrix)
15 * A C T G C G T A A C T G C T A G C G T A A C T G C G T A C T G A T C G A G A C T C G A T A C T G A G T C 1e-10-2.359e+011.22%0.05%25.8bp (23.0bp)ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer(0.628)
More Information | Similar Motifs Found
motif file (matrix)
16 * A G T C C G T A C T A G C T A G T C A G A C G T A T C G A G T C C G T A C G T A 1e-9-2.203e+012.07%0.27%19.5bp (31.3bp)Ddit3::Cebpa/MA0019.1/Jaspar(0.635)
More Information | Similar Motifs Found
motif file (matrix)
17 * C G T A C T G A A C T G A C T G A C T G A G T C C G T A A C T G C T G A C T G A C G T A A C T G A G T C 1e-9-2.147e+010.61%0.01%4.9bp (23.0bp)THAP1/MA0597.1/Jaspar(0.618)
More Information | Similar Motifs Found
motif file (matrix)
18 * A G T C C G T A A C T G A C G T A C T G A C T G G T A C C G T A C T G A G C A T A C T G A G T C G T C A A G C T A C G T A C G T 1e-9-2.147e+010.61%0.01%24.1bp (20.3bp)Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(0.579)
More Information | Similar Motifs Found
motif file (matrix)
19 * A C G T A G T C C G T A A C G T A C G T A G T C C G T A C G T A A C T G A C G T 1e-9-2.147e+010.85%0.02%24.1bp (22.5bp)PB0028.1_Hbp1_1/Jaspar(0.715)
More Information | Similar Motifs Found
motif file (matrix)
20 * A T C G C T A G G T A C A G T C C G T A C A T G C G T A C G A T A C T G C G T A A T C G A T C G A T G C T A G C G T C A A T G C 1e-8-1.988e+011.58%0.17%21.8bp (26.1bp)THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer(0.684)
More Information | Similar Motifs Found
motif file (matrix)
21 * C T G A C T G A A G T C A C G T T C G A G A T C T C G A G C T A T A G C A G T C G A T C T G A C G T A C 1e-8-1.974e+013.41%0.88%27.0bp (28.8bp)GFY(?)/Promoter/Homer(0.747)
More Information | Similar Motifs Found
motif file (matrix)
22 * A C G T A C T G C G T A A C G T A G C T T A C G G T C A A G T C C G A T A G C T 1e-8-1.972e+011.58%0.17%26.0bp (29.3bp)DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer(0.767)
More Information | Similar Motifs Found
motif file (matrix)
23 * A C G T A T C G A G T C A C G T A T C G A C G T C A G T G A T C G T C A C T G A 1e-8-1.932e+012.44%0.47%22.0bp (33.9bp)ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.718)
More Information | Similar Motifs Found
motif file (matrix)
24 * A G T C A G T C C T A G A C T G A G T C A C G T A C T G G T A C A G T C C G T A A C T G A G T C A C G T 1e-7-1.653e+010.49%0.01%29.8bp (0.0bp)Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer(0.629)
More Information | Similar Motifs Found
motif file (matrix)
25 * A C G T C T A G G T A C A C G T A C T G A C G T A C G T C G T A A C G T A G T C 1e-6-1.483e+010.85%0.05%25.5bp (33.7bp)GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.763)
More Information | Similar Motifs Found
motif file (matrix)
26 * A G T C C T G A A G T C C T G A A G T C C T G A A G T C C T G A T G A C C G T A A G T C C T G A A T G C G T C A A G T C G T C A 1e-5-1.321e+011.58%0.30%18.8bp (32.2bp)PB0130.1_Gm397_2/Jaspar(0.644)
More Information | Similar Motifs Found
motif file (matrix)
27 * A C T G A C T G G A T C A T C G C T G A A C T G A C T G A G T C A T C G T A C G A C T G A T C G A T G C 1e-5-1.306e+010.73%0.04%28.4bp (19.3bp)Sp1(Zf)/Promoter/Homer(0.672)
More Information | Similar Motifs Found
motif file (matrix)
28 * C G A T G C A T A G C T G A C T C G A T A C G T A G C T A C G T A C G T A G C T G C A T C A T G G A C T 1e-4-1.123e+011.95%0.53%26.5bp (24.1bp)PB0182.1_Srf_2/Jaspar(0.811)
More Information | Similar Motifs Found
motif file (matrix)