Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-144 | -3.332e+02 | 0.0000 | 114.0 | 13.89% | 142.3 | 0.31% | motif file (matrix) |
svg |
2 |
| PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-39 | -9.108e+01 | 0.0000 | 83.0 | 10.11% | 714.2 | 1.56% | motif file (matrix) |
svg |
3 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-32 | -7.517e+01 | 0.0000 | 122.0 | 14.86% | 1914.3 | 4.18% | motif file (matrix) |
svg |
4 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-31 | -7.315e+01 | 0.0000 | 124.0 | 15.10% | 2016.6 | 4.40% | motif file (matrix) |
svg |
5 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-31 | -7.228e+01 | 0.0000 | 138.0 | 16.81% | 2465.9 | 5.38% | motif file (matrix) |
svg |
6 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-30 | -6.920e+01 | 0.0000 | 109.0 | 13.28% | 1663.1 | 3.63% | motif file (matrix) |
svg |
7 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-28 | -6.521e+01 | 0.0000 | 122.0 | 14.86% | 2138.7 | 4.67% | motif file (matrix) |
svg |
8 |
| Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-28 | -6.471e+01 | 0.0000 | 65.0 | 7.92% | 630.8 | 1.38% | motif file (matrix) |
svg |
9 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-25 | -5.948e+01 | 0.0000 | 270.0 | 32.89% | 8024.8 | 17.51% | motif file (matrix) |
svg |
10 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-23 | -5.513e+01 | 0.0000 | 58.0 | 7.06% | 594.7 | 1.30% | motif file (matrix) |
svg |
11 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-22 | -5.287e+01 | 0.0000 | 183.0 | 22.29% | 4710.2 | 10.28% | motif file (matrix) |
svg |
12 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-20 | -4.773e+01 | 0.0000 | 190.0 | 23.14% | 5222.4 | 11.40% | motif file (matrix) |
svg |
13 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-20 | -4.743e+01 | 0.0000 | 136.0 | 16.57% | 3141.7 | 6.86% | motif file (matrix) |
svg |
14 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-18 | -4.316e+01 | 0.0000 | 171.0 | 20.83% | 4668.9 | 10.19% | motif file (matrix) |
svg |
15 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-17 | -4.067e+01 | 0.0000 | 94.0 | 11.45% | 1898.7 | 4.14% | motif file (matrix) |
svg |
16 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-16 | -3.900e+01 | 0.0000 | 125.0 | 15.23% | 3057.4 | 6.67% | motif file (matrix) |
svg |
17 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-16 | -3.794e+01 | 0.0000 | 326.0 | 39.71% | 12034.9 | 26.26% | motif file (matrix) |
svg |
18 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-15 | -3.612e+01 | 0.0000 | 99.0 | 12.06% | 2218.7 | 4.84% | motif file (matrix) |
svg |
19 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-15 | -3.585e+01 | 0.0000 | 140.0 | 17.05% | 3774.0 | 8.23% | motif file (matrix) |
svg |
20 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-15 | -3.494e+01 | 0.0000 | 111.0 | 13.52% | 2698.0 | 5.89% | motif file (matrix) |
svg |
21 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-15 | -3.464e+01 | 0.0000 | 80.0 | 9.74% | 1615.7 | 3.53% | motif file (matrix) |
svg |
22 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-12 | -2.841e+01 | 0.0000 | 78.0 | 9.50% | 1751.2 | 3.82% | motif file (matrix) |
svg |
23 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-11 | -2.707e+01 | 0.0000 | 71.0 | 8.65% | 1554.2 | 3.39% | motif file (matrix) |
svg |
24 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-11 | -2.700e+01 | 0.0000 | 211.0 | 25.70% | 7395.3 | 16.14% | motif file (matrix) |
svg |
25 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-11 | -2.562e+01 | 0.0000 | 341.0 | 41.53% | 13907.0 | 30.34% | motif file (matrix) |
svg |
26 |
| NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-9 | -2.282e+01 | 0.0000 | 74.0 | 9.01% | 1822.3 | 3.98% | motif file (matrix) |
svg |
27 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-9 | -2.211e+01 | 0.0000 | 130.0 | 15.83% | 4120.9 | 8.99% | motif file (matrix) |
svg |
28 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-9 | -2.145e+01 | 0.0000 | 58.0 | 7.06% | 1299.4 | 2.84% | motif file (matrix) |
svg |
29 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-8 | -2.017e+01 | 0.0000 | 151.0 | 18.39% | 5184.5 | 11.31% | motif file (matrix) |
svg |
30 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-8 | -1.868e+01 | 0.0000 | 40.0 | 4.87% | 784.9 | 1.71% | motif file (matrix) |
svg |
31 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.744e+01 | 0.0000 | 33.0 | 4.02% | 598.7 | 1.31% | motif file (matrix) |
svg |
32 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-7 | -1.732e+01 | 0.0000 | 86.0 | 10.48% | 2565.7 | 5.60% | motif file (matrix) |
svg |
33 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-7 | -1.723e+01 | 0.0000 | 124.0 | 15.10% | 4202.4 | 9.17% | motif file (matrix) |
svg |
34 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-7 | -1.680e+01 | 0.0000 | 47.0 | 5.72% | 1083.5 | 2.36% | motif file (matrix) |
svg |
35 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-7 | -1.649e+01 | 0.0000 | 24.0 | 2.92% | 358.9 | 0.78% | motif file (matrix) |
svg |
36 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-6 | -1.563e+01 | 0.0000 | 103.0 | 12.55% | 3397.7 | 7.41% | motif file (matrix) |
svg |
37 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-6 | -1.514e+01 | 0.0000 | 115.0 | 14.01% | 3965.0 | 8.65% | motif file (matrix) |
svg |
38 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-6 | -1.499e+01 | 0.0000 | 136.0 | 16.57% | 4931.8 | 10.76% | motif file (matrix) |
svg |
39 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-6 | -1.488e+01 | 0.0000 | 41.0 | 4.99% | 943.9 | 2.06% | motif file (matrix) |
svg |
40 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-6 | -1.480e+01 | 0.0000 | 36.0 | 4.38% | 773.9 | 1.69% | motif file (matrix) |
svg |
41 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-6 | -1.390e+01 | 0.0000 | 39.0 | 4.75% | 909.5 | 1.98% | motif file (matrix) |
svg |
42 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.332e+01 | 0.0000 | 16.0 | 1.95% | 206.6 | 0.45% | motif file (matrix) |
svg |
43 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.332e+01 | 0.0000 | 85.0 | 10.35% | 2783.5 | 6.07% | motif file (matrix) |
svg |
44 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.323e+01 | 0.0000 | 43.0 | 5.24% | 1082.2 | 2.36% | motif file (matrix) |
svg |
45 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-5 | -1.283e+01 | 0.0000 | 123.0 | 14.98% | 4529.8 | 9.88% | motif file (matrix) |
svg |
46 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-5 | -1.202e+01 | 0.0000 | 86.0 | 10.48% | 2924.1 | 6.38% | motif file (matrix) |
svg |
47 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.180e+01 | 0.0001 | 42.0 | 5.12% | 1109.1 | 2.42% | motif file (matrix) |
svg |
48 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-5 | -1.159e+01 | 0.0001 | 62.0 | 7.55% | 1923.7 | 4.20% | motif file (matrix) |
svg |
49 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-4 | -1.093e+01 | 0.0001 | 18.0 | 2.19% | 308.5 | 0.67% | motif file (matrix) |
svg |
50 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-4 | -9.667e+00 | 0.0005 | 40.0 | 4.87% | 1139.9 | 2.49% | motif file (matrix) |
svg |
51 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-4 | -9.562e+00 | 0.0005 | 66.0 | 8.04% | 2238.2 | 4.88% | motif file (matrix) |
svg |
52 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-3 | -8.953e+00 | 0.0009 | 36.0 | 4.38% | 1019.2 | 2.22% | motif file (matrix) |
svg |
53 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-3 | -8.147e+00 | 0.0020 | 11.0 | 1.34% | 168.7 | 0.37% | motif file (matrix) |
svg |
54 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-3 | -7.878e+00 | 0.0026 | 7.0 | 0.85% | 72.7 | 0.16% | motif file (matrix) |
svg |
55 |
| GFY(?)/Promoter/Homer | 1e-3 | -7.871e+00 | 0.0026 | 10.0 | 1.22% | 146.8 | 0.32% | motif file (matrix) |
svg |
56 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-3 | -7.799e+00 | 0.0027 | 16.0 | 1.95% | 330.7 | 0.72% | motif file (matrix) |
svg |
57 |
| HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer | 1e-3 | -7.639e+00 | 0.0031 | 16.0 | 1.95% | 335.4 | 0.73% | motif file (matrix) |
svg |
58 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-3 | -7.377e+00 | 0.0039 | 155.0 | 18.88% | 6738.1 | 14.70% | motif file (matrix) |
svg |
59 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.270e+00 | 0.0043 | 10.0 | 1.22% | 158.2 | 0.35% | motif file (matrix) |
svg |
60 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-3 | -7.267e+00 | 0.0043 | 69.0 | 8.40% | 2575.5 | 5.62% | motif file (matrix) |
svg |
61 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-3 | -7.192e+00 | 0.0045 | 19.0 | 2.31% | 455.9 | 0.99% | motif file (matrix) |
svg |
62 |
| Sp1(Zf)/Promoter/Homer | 1e-3 | -7.006e+00 | 0.0053 | 16.0 | 1.95% | 356.9 | 0.78% | motif file (matrix) |
svg |
63 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.901e+00 | 0.0058 | 34.0 | 4.14% | 1058.2 | 2.31% | motif file (matrix) |
svg |
64 |
| RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.878e+00 | 0.0059 | 53.0 | 6.46% | 1884.2 | 4.11% | motif file (matrix) |
svg |
65 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-2 | -6.875e+00 | 0.0059 | 62.0 | 7.55% | 2292.1 | 5.00% | motif file (matrix) |
svg |
66 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -6.815e+00 | 0.0061 | 8.0 | 0.97% | 112.0 | 0.24% | motif file (matrix) |
svg |
67 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -6.760e+00 | 0.0063 | 71.0 | 8.65% | 2720.8 | 5.94% | motif file (matrix) |
svg |
68 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -6.751e+00 | 0.0063 | 44.0 | 5.36% | 1496.9 | 3.27% | motif file (matrix) |
svg |
69 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -6.709e+00 | 0.0064 | 52.0 | 6.33% | 1854.0 | 4.05% | motif file (matrix) |
svg |
70 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-2 | -6.642e+00 | 0.0068 | 16.0 | 1.95% | 369.6 | 0.81% | motif file (matrix) |
svg |
71 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-2 | -6.511e+00 | 0.0076 | 35.0 | 4.26% | 1126.9 | 2.46% | motif file (matrix) |
svg |
72 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.445e+00 | 0.0080 | 37.0 | 4.51% | 1216.4 | 2.65% | motif file (matrix) |
svg |
73 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -6.440e+00 | 0.0080 | 123.0 | 14.98% | 5280.2 | 11.52% | motif file (matrix) |
svg |
74 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-2 | -5.844e+00 | 0.0142 | 79.0 | 9.62% | 3206.9 | 7.00% | motif file (matrix) |
svg |
75 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.649e+00 | 0.0171 | 59.0 | 7.19% | 2279.6 | 4.97% | motif file (matrix) |
svg |
76 |
| ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-2 | -5.575e+00 | 0.0182 | 38.0 | 4.63% | 1327.4 | 2.90% | motif file (matrix) |
svg |
77 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -5.530e+00 | 0.0187 | 60.0 | 7.31% | 2339.2 | 5.10% | motif file (matrix) |
svg |
78 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.412e+00 | 0.0208 | 52.0 | 6.33% | 1978.6 | 4.32% | motif file (matrix) |
svg |
79 |
| PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.336e+00 | 0.0222 | 10.0 | 1.22% | 207.1 | 0.45% | motif file (matrix) |
svg |
80 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -5.156e+00 | 0.0262 | 16.0 | 1.95% | 431.6 | 0.94% | motif file (matrix) |
svg |
81 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-2 | -5.105e+00 | 0.0272 | 44.0 | 5.36% | 1641.0 | 3.58% | motif file (matrix) |
svg |
82 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-2 | -5.057e+00 | 0.0283 | 187.0 | 22.78% | 8812.3 | 19.23% | motif file (matrix) |
svg |
83 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.891e+00 | 0.0330 | 69.0 | 8.40% | 2847.3 | 6.21% | motif file (matrix) |
svg |
84 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -4.805e+00 | 0.0355 | 40.0 | 4.87% | 1486.4 | 3.24% | motif file (matrix) |
svg |
85 |
| Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-2 | -4.793e+00 | 0.0355 | 41.0 | 4.99% | 1533.1 | 3.35% | motif file (matrix) |
svg |
86 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.780e+00 | 0.0355 | 52.0 | 6.33% | 2047.1 | 4.47% | motif file (matrix) |
svg |
87 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.732e+00 | 0.0369 | 98.0 | 11.94% | 4302.8 | 9.39% | motif file (matrix) |
svg |
88 |
| E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-2 | -4.731e+00 | 0.0369 | 8.0 | 0.97% | 160.0 | 0.35% | motif file (matrix) |
svg |
89 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -4.704e+00 | 0.0370 | 121.0 | 14.74% | 5470.1 | 11.94% | motif file (matrix) |
svg |
90 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -4.677e+00 | 0.0376 | 45.0 | 5.48% | 1730.4 | 3.78% | motif file (matrix) |
svg |
91 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-2 | -4.627e+00 | 0.0391 | 8.0 | 0.97% | 162.5 | 0.35% | motif file (matrix) |
svg |
92 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -4.622e+00 | 0.0391 | 36.0 | 4.38% | 1321.7 | 2.88% | motif file (matrix) |
svg |