Homer de novo Motif Results (hs_CervixCarcinoma_HeLa_undef_POLIII_SRX017001_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 595
Total background sequences = 44242
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G A T A G T C A G C T A G T C C G T A G T A C A G T C C G T A T C G A A G C T A G T C G C A T C T G A C G A T G T C A C T G A 1e-16-3.873e+011.18%0.00%22.6bp (2.8bp)PBX1/MA0070.1/Jaspar(0.606)
More Information | Similar Motifs Found
motif file (matrix)
2 A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T 1e-14-3.406e+012.69%0.15%20.9bp (30.2bp)Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer(0.560)
More Information | Similar Motifs Found
motif file (matrix)
3 C G T A T G A C G T C A C G T A A T G C A G C T A C T G G T C A A G T C C G T A G A C T A C T G A C G T A T C G G T C A A G T C 1e-14-3.247e+011.01%0.00%18.4bp (0.0bp)MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer(0.671)
More Information | Similar Motifs Found
motif file (matrix)
4 G T C A A G T C A C T G A C G T A C T G C A T G T C G A A T G C C A G T A C G T A C T G A G C T A C T G C G A T A T C G C A T G 1e-13-3.086e+011.34%0.01%17.6bp (18.4bp)RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer(0.572)
More Information | Similar Motifs Found
motif file (matrix)
5 C G T A A G T C C G T A A G T C A C T G A G C T A C T G T C G A A C G T A C T G C T G A C G T A A G T C C G T A A G T C A T G C 1e-12-2.832e+011.01%0.01%27.5bp (0.0bp)Mlxip/MA0622.1/Jaspar(0.622)
More Information | Similar Motifs Found
motif file (matrix)
6 T A C G A T G C G T C A A T G C A G T C G T C A A G T C G C A T C T A G A T C G T C A G A G T C A G T C C G T A A T C G A G T C 1e-12-2.832e+011.01%0.01%29.6bp (17.4bp)Nr5a2/MA0505.1/Jaspar(0.540)
More Information | Similar Motifs Found
motif file (matrix)
7 * A C T G C G T A A G T C C G T A A G T C T A G C A T C G A G C T A T C G A C T G A C G T C A G T A C T G C G T A A G T C G T C A 1e-11-2.636e+010.84%0.00%25.5bp (0.0bp)PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer(0.670)
More Information | Similar Motifs Found
motif file (matrix)
8 * A C G T C T A G A T C G G C T A G T C A A G C T T C G A A T C G A C G T A C T G A C G T A C T G C T G A T A G C C A T G A C T G 1e-11-2.636e+010.84%0.00%18.1bp (2.6bp)Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer(0.571)
More Information | Similar Motifs Found
motif file (matrix)
9 * C G T A A T C G G T A C A C G T A G T C C G T A A C T G A G T C T G A C A C T G A C G T A C G T C G T A G T A C A C G T C G A T 1e-11-2.636e+010.84%0.00%12.0bp (0.0bp)MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer(0.687)
More Information | Similar Motifs Found
motif file (matrix)
10 * C T A G A C T G A T G C A G T C C G T A G T A C C T A G A C G T A C T G T A C G G T A C A G T C C G A T 1e-11-2.538e+011.34%0.03%25.1bp (19.8bp)n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer(0.805)
More Information | Similar Motifs Found
motif file (matrix)
11 * C G T A A G T C A C G T C T G A A T C G A G T C C G T A A C T G C G T A A C T G A G T C C T A G C G T A 1e-9-2.290e+010.84%0.01%4.9bp (10.5bp)POL013.1_MED-1/Jaspar(0.523)
More Information | Similar Motifs Found
motif file (matrix)
12 * C G T A C G T A C G T A C T G A A C G T C G T A A C G T C G T A C G T A C A G T A G T C A T G C C T A G 1e-9-2.290e+010.84%0.01%10.0bp (10.8bp)PB0174.1_Sox30_2/Jaspar(0.630)
More Information | Similar Motifs Found
motif file (matrix)
13 * C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C 1e-9-2.290e+010.84%0.01%29.5bp (17.9bp)Sox17/MA0078.1/Jaspar(0.567)
More Information | Similar Motifs Found
motif file (matrix)
14 * C G T A C G A T T A C G C T G A C T A G T A G C C T G A A G T C A C G T G T A C G T A C G T A C C G T A C T A G T C G A A C T G 1e-9-2.290e+010.84%0.01%29.8bp (18.8bp)PB0099.1_Zfp691_1/Jaspar(0.664)
More Information | Similar Motifs Found
motif file (matrix)
15 * A C G T A G T C G T C A C G A T A T C G A G T C A G T C C G T A A C T G A C T G A G T C A G T C A G C T A C T G G A C T A C T G 1e-9-2.290e+010.84%0.01%24.5bp (11.1bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.690)
More Information | Similar Motifs Found
motif file (matrix)
16 * C T G A G T C A G T C A A C T G A G T C G T A C A G T C A G T C A G T C A C G T A G C T A G T C A G T C 1e-9-2.286e+011.01%0.01%25.7bp (11.6bp)PB0076.1_Sp4_1/Jaspar(0.621)
More Information | Similar Motifs Found
motif file (matrix)
17 * A C G T A C T G A G C T A C T G A C T G G C T A A G T C C G T A A C G T A T G C A G T C A C G T A C T G 1e-9-2.206e+011.18%0.03%28.9bp (26.2bp)RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer(0.662)
More Information | Similar Motifs Found
motif file (matrix)
18 * A C G T A C T G C T A G A G T C C G A T A C G T A G T C A C G T A C G T G T A C A C G T A G C T C G T A 1e-9-2.089e+010.84%0.01%17.4bp (18.3bp)Nr2e1/MA0676.1/Jaspar(0.615)
More Information | Similar Motifs Found
motif file (matrix)
19 * G T C A G C A T A G T C A C G T A C G T A G T C G T C A A T G C C G A T C G A T T A C G A G T C C G T A C T A G A G T C A G T C 1e-9-2.089e+010.84%0.01%18.7bp (21.5bp)PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer(0.500)
More Information | Similar Motifs Found
motif file (matrix)
20 * G T C A A G C T A T G C T C G A T G A C A C G T A T C G C G A T A C T G G T A C 1e-8-2.065e+017.06%2.40%24.5bp (35.3bp)Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer(0.611)
More Information | Similar Motifs Found
motif file (matrix)
21 * A G T C A C G T A C G T C G T A A G T C A C G T A C T G A C G T C T G A A C G T C T G A G T A C C T A G 1e-8-2.043e+010.67%0.00%15.6bp (0.0bp)Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer(0.603)
More Information | Similar Motifs Found
motif file (matrix)
22 * C T A G A C T G A G T C A G C T A C G T A C G T A C T G C G A T A T G C A C T G A C G T A G T C A C G T 1e-8-2.043e+010.67%0.00%22.8bp (0.0bp)PH0170.1_Tgif2/Jaspar(0.597)
More Information | Similar Motifs Found
motif file (matrix)
23 * C G T A A C G T A C T G G T A C C G A T C G A T A T C G G T C A A C T G A C G T A C T G A T G C A C G T A C T G A G T C C G T A 1e-8-2.043e+010.67%0.00%18.7bp (17.3bp)Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer(0.601)
More Information | Similar Motifs Found
motif file (matrix)
24 * C G A T A G T C A G T C C G T A A G C T G A T C C T G A A C T G C A G T G T A C A C G T A T C G A G T C C G T A A G C T A G T C 1e-8-2.043e+010.67%0.00%22.1bp (17.1bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.539)
More Information | Similar Motifs Found
motif file (matrix)
25 * C G T A C G T A C T G A A G T C C G T A A G T C G T C A A C G T C G T A A G T C A C G T T C G A G C T A A G T C A G T C G T C A 1e-8-2.043e+010.67%0.00%24.9bp (5.8bp)PB0016.1_Foxj1_1/Jaspar(0.582)
More Information | Similar Motifs Found
motif file (matrix)
26 * A C G T G T C A C G T A C G T A C G T A A T G C A G T C C G A T G C T A C G T A A C G T A G C T G C A T 1e-8-2.007e+011.01%0.02%24.2bp (25.0bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.622)
More Information | Similar Motifs Found
motif file (matrix)
27 * C T A G T A C G G A C T A C G T C T A G A T G C C A G T T A C G G A C T A T G C 1e-8-1.984e+015.55%1.64%26.4bp (29.7bp)MEIS2/MA0774.1/Jaspar(0.639)
More Information | Similar Motifs Found
motif file (matrix)
28 * A T C G C G T A C G T A A T G C A G T C C G A T T C A G T G A C C G T A A C T G A G T C T C G A T A C G A T C G A C T G G A C T 1e-8-1.958e+011.51%0.08%17.7bp (29.5bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.587)
More Information | Similar Motifs Found
motif file (matrix)
29 * C T A G A T C G C G A T A T C G C T G A C G A T A C T G A C T G A C T G C T A G G C T A T A C G C G A T 1e-8-1.930e+012.52%0.34%25.9bp (33.1bp)MZF1/MA0056.1/Jaspar(0.678)
More Information | Similar Motifs Found
motif file (matrix)
30 * G A C T A T G C C G T A A C T G A T G C G A C T A T G C A G C T A T C G A G T C A T G C A G T C G T A C A C G T A T G C T C G A 1e-8-1.913e+011.51%0.09%23.7bp (27.7bp)POL003.1_GC-box/Jaspar(0.645)
More Information | Similar Motifs Found
motif file (matrix)
31 * A C T G A G T C C T A G A C T G A T C G C A G T A C T G A C G T A C T G A G T C C G T A A T C G A C G T 1e-7-1.833e+011.18%0.04%14.3bp (38.1bp)PB0130.1_Gm397_2/Jaspar(0.712)
More Information | Similar Motifs Found
motif file (matrix)
32 * A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C 1e-7-1.773e+011.51%0.11%23.8bp (25.1bp)Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer(0.741)
More Information | Similar Motifs Found
motif file (matrix)
33 * A C G T C G T A A G T C A C G T A G T C C T G A A T C G C T A G C G T A T A C G C G T A G T C A C G A T 1e-7-1.767e+010.67%0.01%28.3bp (7.1bp)MAFK/MA0496.1/Jaspar(0.615)
More Information | Similar Motifs Found
motif file (matrix)
34 * A T G C A T C G G T A C A G T C A G C T A C G T A G T C A G T C G A T C G C T A 1e-7-1.672e+012.35%0.36%25.8bp (27.0bp)Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.713)
More Information | Similar Motifs Found
motif file (matrix)
35 * A C T G A C T G A C T G A G T C C G T A A C T G G T A C G T A C A G T C A G T C 1e-6-1.529e+011.68%0.18%24.8bp (28.1bp)PB0133.1_Hic1_2/Jaspar(0.700)
More Information | Similar Motifs Found
motif file (matrix)
36 * A C G T C G T A A G T C A G T C A G T C C G T A A G C T C G A T C A T G A C G T A C T G A G C T A C T G A G C T A C T G A G C T 1e-6-1.473e+010.50%0.00%24.0bp (0.0bp)PB0168.1_Sox14_2/Jaspar(0.658)
More Information | Similar Motifs Found
motif file (matrix)
37 * A T G C A G T C G T C A A C G T G T C A G T A C G A T C A T G C C G T A A T G C C T A G G T C A A G T C G T A C G T A C G T C A 1e-6-1.473e+010.50%0.00%30.1bp (0.0bp)Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer(0.621)
More Information | Similar Motifs Found
motif file (matrix)
38 * A T G C G A C T T A C G A G C T A C T G C G A T A T C G C T A G A T G C A C G T T C A G C A G T C T A G C T A G G T C A T A C G 1e-6-1.473e+010.50%0.00%23.4bp (0.0bp)Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer(0.594)
More Information | Similar Motifs Found
motif file (matrix)
39 * A C G T G T A C A T C G T G C A T A G C T G C A A T G C T A C G A G T C A C G T A C T G A T C G A G C T 1e-6-1.444e+015.55%2.07%25.4bp (32.6bp)Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer(0.696)
More Information | Similar Motifs Found
motif file (matrix)
40 * G T C A A G T C C G T A A G C T C T G A G A T C T C A G A C G T A T C G G A T C 1e-6-1.428e+014.20%1.32%25.8bp (40.6bp)Twist2/MA0633.1/Jaspar(0.791)
More Information | Similar Motifs Found
motif file (matrix)
41 * T C G A A G T C C T G A A G T C T C A G G A C T T C A G G A C T C T A G A G C T T C A G A G T C C T G A A G T C T C G A A G T C 1e-5-1.333e+016.22%2.60%24.8bp (45.1bp)PB0026.1_Gm397_1/Jaspar(0.733)
More Information | Similar Motifs Found
motif file (matrix)
42 * A C G T A G T C C G T A T G C A C T A G C G A T A C T G A C G T C G T A A C G T A G T C A C G T A C T G 1e-5-1.271e+010.67%0.02%17.3bp (26.2bp)DMRT3/MA0610.1/Jaspar(0.626)
More Information | Similar Motifs Found
motif file (matrix)
43 * A C T G A G T C A C G T C G T A C G T A C G T A A C T G C G T A A G T C A G T C 1e-5-1.266e+010.50%0.00%17.7bp (18.2bp)PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer(0.705)
More Information | Similar Motifs Found
motif file (matrix)
44 * A C T G A C T G A T C G A T G C A C G T A G T C G T C A A C T G A C G T C T G A C T G A A C G T A T G C C G T A A C T G A C T G 1e-5-1.266e+010.50%0.00%25.6bp (15.4bp)Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer(0.555)
More Information | Similar Motifs Found
motif file (matrix)
45 * C T A G A C G T A C T G G A C T A C T G A C G T A C T G T G A C T C A G C G T A 1e-4-1.001e+011.68%0.34%22.3bp (41.4bp)PB0130.1_Gm397_2/Jaspar(0.794)
More Information | Similar Motifs Found
motif file (matrix)
46 * A T C G T G A C A C T G C G T A C G T A C G T A C G T A A C T G A C G T A C T G A C G T A T G C C G T A A T C G C T A G A C T G 1e-4-9.321e+000.34%0.00%3.0bp (0.0bp)Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer(0.573)
More Information | Similar Motifs Found
motif file (matrix)
47 * A C G T A C T G A G T C A C T G C G T A A G T C C G T A A G T C C G T A A G T C A G T C A G T C C G T A 1e-3-7.944e+000.34%0.01%23.6bp (29.3bp)Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer(0.757)
More Information | Similar Motifs Found
motif file (matrix)
48 * C G T A A G T C C G T A A C G T C G T A A G T C A C G T C G T A C G T A A G T C 1e-1-4.315e+000.17%0.00%25.3bp (0.0bp)PB0056.1_Rfxdc2_1/Jaspar(0.609)
More Information | Similar Motifs Found
motif file (matrix)