Information for 3-TTTCGAGTGC (Motif 32)

A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C
Reverse Opposite:
A C T G A G T C T C G A A G T C A C G T G T A C A C T G C G T A C T G A C G T A
p-value:1e-7
log p-value:-1.773e+01
Information Content per bp:1.831
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif47.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets51.6 +/- 23.8bp
Average Position of motif in Background45.3 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTTCGAGTGC-
-BTBRAGTGSN
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTTCGAGTGC----
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTCGAGTGC-
-CTYRAGTGSY
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TTTCGAGTGC--
--TTGAGTGSTT
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTCGAGTGC
-NTCAAGTGG
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTTCGAGTGC--
--TTRAGTGSYK
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTTCGAGTGC--
-CTTGAGTGGCT
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTCGAGTGC----
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTTCGAGTGC-
-NTCAAGTGGN
 A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTCGAGTGC----
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A G C T A C G T T G A C A C T G C G T A A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A