Information for 6-AAGAGACTGTCGC (Motif 13)

C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C
Reverse Opposite:
A C T G A G T C T A C G C G T A A G T C C G T A C T A G C G A T T G A C C G A T A G T C A C G T A C G T
p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.839
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.2 +/- 29.5bp
Average Position of motif in Background42.3 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGAGACTGTCGC
--CTCATTGTC--
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAGAGACTGTCGC---
GGAAAAATTGTTAGGAA
 A C G T C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AAGAGACTGTCGC----
-ATGTACAGTAGCAAAG
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C A C G T A C G T A C G T A C G T
A C G T G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AAGAGACTGTCGC----
-ATTTACAGTAGCAAAA
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C A C G T A C G T A C G T A C G T
A C G T G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AAGAGACTGTCGC---
----NNHTGTGGTTWN
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AAGAGACTGTCGC--
----GTCTGTGGTTT
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AAGAGACTGTCGC
GAAAGTGAAAGT---
 A C G T A C G T C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AAGAGACTGTCGC---
AANTTATTGTTCTNNA
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AAGAGACTGTCGC
-----ATTGTT--
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AAGAGACTGTCGC
-----GCTGTG--
 C G T A C G T A C T A G C G T A A C T G C G T A A G T C A C G T A C T G A C G T A T G C C T A G A G T C
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T