Homer de novo Motif Results (hs_HuH7_HuH7_undef_FOXA1_SRX159093_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 681
Total background sequences = 46232
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G T A C C G A T T C G A C G A T A C T G A G C T G T C A G T C A C G T A A G T C C G T A C G T A C A T G 1e-362-8.355e+0249.19%2.08%20.8bp (33.0bp)Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer(0.983)
More Information | Similar Motifs Found
motif file (matrix)
2 G T C A G C A T A T G C A G C T A C G T A C G T A C T G C T A G A C T G G A C T C G T A G A C T C G A T A C T G G C T A A C G T 1e-16-3.886e+011.17%0.01%23.7bp (7.9bp)PB0016.1_Foxj1_1/Jaspar(0.611)
More Information | Similar Motifs Found
motif file (matrix)
3 C G T A T G C A A G T C A G T C A G C T A G T C G C T A C G T A A G T C A G T C C G A T A C T G C T A G G T C A A G T C A G T C 1e-16-3.808e+011.03%0.00%21.7bp (23.5bp)ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer(0.606)
More Information | Similar Motifs Found
motif file (matrix)
4 C G T A A C T G A T C G A T G C A C G T A G T C C G T A A G T C A T C G C G A T C G A T A C T G A G T C 1e-14-3.324e+011.03%0.01%24.3bp (17.2bp)Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer(0.617)
More Information | Similar Motifs Found
motif file (matrix)
5 A G T C A G C T A G T C A C G T A G C T A C G T A C T G C T G A A C G T A C T G G T A C A G T C C G A T A G T C G T A C A C T G 1e-14-3.324e+011.03%0.01%25.7bp (15.4bp)TCF7L2/MA0523.1/Jaspar(0.560)
More Information | Similar Motifs Found
motif file (matrix)
6 C T A G A C T G C T G A C G T A G A T C G A C T G T C A T C G A T G A C G A C T C T A G C G T A C T G A G T C A T G C A A C G T 1e-13-3.209e+011.91%0.07%24.7bp (25.7bp)PB0012.1_Elf3_1/Jaspar(0.611)
More Information | Similar Motifs Found
motif file (matrix)
7 C T G A C T A G A G T C G T C A C G T A G T C A C G A T A C G T C G A T A C T G G A T C C G A T T A G C C T G A C T A G C T A G 1e-12-2.789e+011.32%0.03%26.5bp (27.8bp)MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer(0.665)
More Information | Similar Motifs Found
motif file (matrix)
8 A C T G A C G T A C G T C A T G T C A G G T C A A G T C A C G T A G C T A C G T C T A G A T C G T A G C 1e-12-2.784e+013.08%0.39%22.2bp (29.7bp)PB0134.1_Hnf4a_2/Jaspar(0.819)
More Information | Similar Motifs Found
motif file (matrix)
9 G A T C G A T C G C T A A C G T A C T G A C G T A C T G C G T A C T A G A C G T A G T C C G T A A G T C 1e-12-2.776e+010.88%0.01%28.9bp (24.6bp)FOSL2/MA0478.1/Jaspar(0.769)
More Information | Similar Motifs Found
motif file (matrix)
10 * A C G T A C T G A C T G A C G T A C T G C G A T A G T C A G C T C G T A A C T G T C A G A G T C A C G T 1e-11-2.590e+010.73%0.00%26.2bp (13.9bp)SMAD3/MA0795.1/Jaspar(0.697)
More Information | Similar Motifs Found
motif file (matrix)
11 * A C T G A C G T A C T G A C T G A C G T A G C T C T G A C G T A A C G T C G T A G T C A C A G T A C G T 1e-11-2.590e+010.73%0.00%35.7bp (0.0bp)HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer(0.729)
More Information | Similar Motifs Found
motif file (matrix)
12 * C G T A G T C A C G A T T G A C A G T C A C G T A T C G A C T G A C G T A G C T A C G T G T C A C G T A A T C G A G T C C G A T 1e-10-2.363e+010.88%0.01%20.1bp (30.4bp)MEF2B/MA0660.1/Jaspar(0.513)
More Information | Similar Motifs Found
motif file (matrix)
13 * A T C G C G T A A C T G C T A G T C A G A C G T A C G T A C T G A G T C C G T A A T G C C G T A C T G A 1e-9-2.193e+011.17%0.04%30.0bp (29.2bp)CEBPA/MA0102.3/Jaspar(0.787)
More Information | Similar Motifs Found
motif file (matrix)
14 * C A T G A T G C G T C A G C A T A C G T C G T A A C G T A C G T A C T G G C T A A G C T A C G T A C G T A G C T A C G T A G T C 1e-8-2.043e+010.73%0.01%14.1bp (5.7bp)ONECUT3/MA0757.1/Jaspar(0.827)
More Information | Similar Motifs Found
motif file (matrix)
15 * A C G T C G T A G C T A G C A T A G C T A C G T C G T A G A T C C T A G C G A T C G A T A C T G A C G T C G T A A G T C C G T A 1e-8-2.006e+010.59%0.00%26.8bp (10.7bp)PB0096.1_Zfp187_1/Jaspar(0.567)
More Information | Similar Motifs Found
motif file (matrix)
16 * A G T C C T G A A G T C G T A C C G T A A T C G T A C G T C G A A G C T A G T C A T G C G C T A T A C G G T A C A G T C C G T A 1e-8-2.006e+010.59%0.00%33.4bp (2.6bp)E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(0.542)
More Information | Similar Motifs Found
motif file (matrix)
17 * C G A T A C G T C G T A A C G T C G T A A C G T A C T G A G T C A G C T A C G T A C G T A G T C A G T C 1e-8-1.900e+010.73%0.01%17.0bp (18.7bp)SD0003.1_at_AC_acceptor/Jaspar(0.644)
More Information | Similar Motifs Found
motif file (matrix)
18 * T A G C C G T A C G T A G C T A T A G C C A T G A G T C A G T C C G A T A G T C A C G T T A C G G T A C 1e-8-1.863e+011.76%0.18%27.4bp (30.1bp)PB0091.1_Zbtb3_1/Jaspar(0.605)
More Information | Similar Motifs Found
motif file (matrix)
19 * G T A C C G T A C T A G A T G C A G T C C G T A A C G T A C T G A C T G G A T C C G A T A C T G C T A G 1e-8-1.856e+011.32%0.08%17.9bp (36.4bp)Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer(0.704)
More Information | Similar Motifs Found
motif file (matrix)
20 * A C T G C T G A A C G T G T C A C G T A A G T C C G T A A C G T A C G T C G T A A G T C A G T C C G T A 1e-7-1.730e+010.59%0.01%32.5bp (17.0bp)PB0141.1_Isgf3g_2/Jaspar(0.637)
More Information | Similar Motifs Found
motif file (matrix)
21 * C T A G C G T A A C G T C T G A C T A G A C T G A C T G C G T A C T G A T A G C C G A T A C T G C T G A 1e-7-1.646e+011.62%0.18%33.3bp (26.0bp)SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer(0.670)
More Information | Similar Motifs Found
motif file (matrix)
22 * A T C G A G C T C T G A G A T C G T C A C G T A A T G C A C G T A C T G A C G T C T A G A C G T A T G C 1e-6-1.603e+011.47%0.15%23.8bp (33.2bp)POL009.1_DCE_S_II/Jaspar(0.601)
More Information | Similar Motifs Found
motif file (matrix)
23 * A C T G A G T C C G T A A C T G A C G T A C T G C G T A C G T A A C G T C G T A 1e-6-1.455e+010.59%0.01%20.9bp (16.7bp)Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(0.690)
More Information | Similar Motifs Found
motif file (matrix)
24 * A G T C G T A C C G T A A G T C C G T A C G A T C T A G A G T C C G T A A C G T A C G T A C G T C G T A A G T C A C G T A C G T 1e-6-1.446e+010.44%0.00%4.1bp (0.0bp)FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer(0.603)
More Information | Similar Motifs Found
motif file (matrix)
25 * A T G C A G C T A G T C C G T A A C G T A C T G A C T G A C G T C G T A A C G T A G T C A C G T A G T C C G A T A C T G A C G T 1e-6-1.446e+010.44%0.00%18.8bp (0.0bp)PB0126.1_Gata5_2/Jaspar(0.638)
More Information | Similar Motifs Found
motif file (matrix)
26 * C G T A G T A C A G T C G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C T G A C G T C T G A C G T A A C G T A C G T 1e-6-1.446e+010.44%0.00%18.3bp (0.0bp)Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer(0.653)
More Information | Similar Motifs Found
motif file (matrix)
27 * G T C A A G T C A G C T A C G T A G T C A G T C A G T C C G A T C G T A A C T G A C T G A C T G C T G A 1e-5-1.296e+010.59%0.01%13.7bp (26.9bp)EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer(0.848)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C T G A C G T A C G T A G T C C G T A C G T A C G T A A G T C C G T A C T G A 1e-5-1.286e+010.73%0.03%27.7bp (17.8bp)LIN54/MA0619.1/Jaspar(0.703)
More Information | Similar Motifs Found
motif file (matrix)