Homer de novo Motif Results (hs_CD4CD25CD45RAexpa_CD4CD25CD45RAexpa_undef_RUNX1_SRX212442_homermotifs_10_13_16/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 926
Total background sequences = 45490
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T C G A T G C A A G T C G A T C C T G A T A G C G C T A C A T G T A C G G T A C 1e-88-2.046e+0218.03%2.45%23.1bp (32.7bp)RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(0.954)
More Information | Similar Motifs Found
motif file (matrix)
2 A T G C C T G A A G T C C G A T A G C T T A G C A T G C A C T G A T C G G A C T 1e-57-1.329e+0219.76%4.87%24.4bp (33.5bp)ELK4/MA0076.2/Jaspar(0.947)
More Information | Similar Motifs Found
motif file (matrix)
3 C T G A T G C A T C G A C G T A A G T C T G A C G A T C C T A G A C T G T G C A 1e-22-5.138e+013.02%0.21%20.8bp (37.5bp)PB0077.1_Spdef_1/Jaspar(0.746)
More Information | Similar Motifs Found
motif file (matrix)
4 C T G A A G C T A T G C A G C T A G T C A C T G A G T C A C T G C T G A C T A G 1e-18-4.273e+012.48%0.17%23.9bp (36.0bp)GFX(?)/Promoter/Homer(0.934)
More Information | Similar Motifs Found
motif file (matrix)
5 A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C T G G T C A T A C G A C T G C T A G A G T C A C T G A G T C A T C G 1e-15-3.628e+010.86%0.01%15.9bp (17.1bp)BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.702)
More Information | Similar Motifs Found
motif file (matrix)
6 C G T A A G T C C G T A A C G T A G C T A C T G A G T C A C T G A C G T A C T G 1e-15-3.583e+010.76%0.00%19.8bp (26.0bp)Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer(0.749)
More Information | Similar Motifs Found
motif file (matrix)
7 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A 1e-13-3.115e+014.64%1.14%27.9bp (32.8bp)NKX3-2/MA0122.2/Jaspar(0.636)
More Information | Similar Motifs Found
motif file (matrix)
8 A G T C A G T C C G T A C G T A A C G T C T A G C G T A G C T A A T C G G A C T A C G T A C G T A C G T 1e-13-3.099e+010.76%0.00%17.9bp (5.3bp)PH0057.1_Hoxb13/Jaspar(0.664)
More Information | Similar Motifs Found
motif file (matrix)
9 T C G A C G T A C A T G C T A G A T C G A C T G G T A C T C A G A C T G A C T G A T C G A T G C G T A C 1e-12-2.966e+012.70%0.39%24.1bp (28.6bp)Sp1(Zf)/Promoter/Homer(0.877)
More Information | Similar Motifs Found
motif file (matrix)
10 A T G C G T A C A C T G A T C G C T G A C G T A A G T C A G T C C G A T A C G T A G C T A T C G A G T C 1e-12-2.828e+010.97%0.02%24.3bp (18.7bp)Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer(0.602)
More Information | Similar Motifs Found
motif file (matrix)
11 A G T C A G T C C G T A C G T A C G T A C G A T A T C G A G T C A G T C A G T C A C T G A T C G A G T C 1e-12-2.817e+010.76%0.01%23.5bp (10.3bp)HIC2/MA0738.1/Jaspar(0.625)
More Information | Similar Motifs Found
motif file (matrix)
12 * A G T C A G C T A C G T G T A C A G T C A C G T A G T C G A C T A C G T T A G C G A T C A T C G A T G C A G C T T A C G G T A C 1e-11-2.726e+011.84%0.17%23.3bp (31.2bp)PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.642)
More Information | Similar Motifs Found
motif file (matrix)
13 * A C G T A C G T A C T G A C G T C T A G A T G C A C G T A G T C C G A T A T G C A G T C A G T C G T A C 1e-10-2.429e+010.54%0.00%24.2bp (25.0bp)MZF1/MA0056.1/Jaspar(0.594)
More Information | Similar Motifs Found
motif file (matrix)
14 * A G C T A T C G A T C G A C G T A C T G A T G C T C A G A C G T C A G T A G T C A G T C T C A G A G T C 1e-10-2.360e+013.13%0.70%27.2bp (36.2bp)SPIB/MA0081.1/Jaspar(0.634)
More Information | Similar Motifs Found
motif file (matrix)
15 * A C T G A C T G A G C T C G T A C G T A A G T C A T G C A C T G C G T A A C T G 1e-10-2.354e+011.19%0.07%27.3bp (21.8bp)PB0159.1_Rfx4_2/Jaspar(0.667)
More Information | Similar Motifs Found
motif file (matrix)
16 * A C G T A C G T A C G T A C T G A G T C A T C G A C T G A G T C A G C T A C T G 1e-9-2.287e+011.19%0.07%29.4bp (42.4bp)RUNX3/MA0684.1/Jaspar(0.686)
More Information | Similar Motifs Found
motif file (matrix)
17 * A C T G T G C A G T A C C T A G A T C G T C G A T G C A T C A G C A T G G T C A 1e-9-2.142e+016.48%2.65%25.8bp (32.9bp)Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer(0.671)
More Information | Similar Motifs Found
motif file (matrix)
18 * A G T C G T A C C G A T C G T A C T G A A G T C A G T C A C G T G C T A G T C A 1e-9-2.093e+010.86%0.03%19.2bp (25.6bp)SD0001.1_at_AC_acceptor/Jaspar(0.614)
More Information | Similar Motifs Found
motif file (matrix)
19 * A C G T A G T C C G T A G T C A C G T A C T G A G T A C A C T G A C T G A G C T G T C A A C T G A G T C 1e-9-2.084e+010.54%0.00%26.4bp (0.0bp)PB0050.1_Osr1_1/Jaspar(0.700)
More Information | Similar Motifs Found
motif file (matrix)
20 * A G T C A G T C A C T G C G T A A C T G A T G C A C G T G T C A A G T C C T A G A G T C A C T G A G T C 1e-8-2.039e+010.65%0.01%28.6bp (18.6bp)Ahr::Arnt/MA0006.1/Jaspar(0.584)
More Information | Similar Motifs Found
motif file (matrix)
21 * A T G C A C T G A G T C A C T G A C T G A C G T C T G A A C T G A C T G A G T C A C T G A C T G A C T G 1e-8-1.878e+010.43%0.00%10.0bp (8.0bp)SP2/MA0516.1/Jaspar(0.726)
More Information | Similar Motifs Found
motif file (matrix)
22 * A C G T A C G T A G T C A G T C C T G A A G T C A C G T A T C G A C T G A G T C A C T G A G C T A C T G 1e-8-1.878e+010.43%0.00%27.8bp (0.0bp)SPIB/MA0081.1/Jaspar(0.644)
More Information | Similar Motifs Found
motif file (matrix)
23 * T C A G A G T C T A C G A C G T A T G C C G T A A T G C A T C G A C G T A T C G T C G A A G T C A T C G 1e-7-1.809e+011.51%0.21%26.7bp (38.0bp)BHLHE41/MA0636.1/Jaspar(0.844)
More Information | Similar Motifs Found
motif file (matrix)
24 * A T G C C G T A A T G C A C T G A T C G C G A T A C T G A G T C A C G T A C G T A C T G A C T G A C T G 1e-7-1.741e+010.54%0.01%16.8bp (9.0bp)PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer(0.569)
More Information | Similar Motifs Found
motif file (matrix)
25 * A C G T A T C G C A G T G T A C A C G T A G T C A C G T A G C T C A G T A T G C 1e-6-1.603e+012.92%0.88%24.0bp (28.7bp)SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar(0.684)
More Information | Similar Motifs Found
motif file (matrix)
26 * A C G T A G T C A G T C A G C T A T G C A G T C C G T A A C G T C T G A A C G T A C T G C G T A A G T C 1e-6-1.602e+010.43%0.00%23.4bp (17.8bp)ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer(0.677)
More Information | Similar Motifs Found
motif file (matrix)
27 * A G T C A G T C G T C A C G T A A C T G A C T G C G T A C G T A C G T A G T C A 1e-4-1.126e+010.97%0.15%38.4bp (26.3bp)NFATC2/MA0152.1/Jaspar(0.722)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C G T A C G T A C T G A C T G A C T G C G A T A C T G A T C G G T C A A C T G A C G T A T C G C G A T 1e-4-1.109e+010.43%0.02%17.0bp (42.9bp)KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer(0.646)
More Information | Similar Motifs Found
motif file (matrix)